RNA id: XM_022672723.1


Basic Information

Item Value
RNA id XM_022672723.1
length 5617
RNA type mRNA
GC content 0.44
exon number 27
gene id LOC103021592
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 12002793 ~ 12040710 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGTTCGCTGCTTGTGAGAGAAGAGAcagacactcactcactcactcactcagagagagatagagagagatacagatacaggcACAGGCTCACTCTTTTTATTTAAGAGGTATCCTTTCACATACTTAGAGAACTACAAAAGAGCGGGAAACTGTTTATTAAGCGTAACTTACGTAAAATGAGTCTGAGAGAAAACCGCGAgcgttagctaacgctagctaacgtAACAGCTAGCTAGCGCAGAGTCCACACATCGCAGCTCACCAAAAAAGCTTAAGCCAGCCCACTACCGACACTGTTggagctagttaacctagctagctaggttaagtTTCAGCAACGCTGGCAAAAAAGCAGACCTTTCTTTCAAAGGCTTGGACATCTCGAGCTCTATGCCAGCAGTTATGACAATGTTAGCCGACCACGCAGCCAGACAGCTGCTGGACTTCAACCAGAAATTGGACATTAACCTCCTGGATAATGTGGTTAACTGCTTGTACCATGGAGTTGGGCCGCAGCAAAGAATGGCCCAGGAGGTCCTTACCCATTTAAAGGAGCACCCGGATGCATGGACTCGAGTGGACACCATACTGGAGTTCTCCCAGAATATGAACACCAAAGAAGAAACGGGGTGTGTCTTCCTGTGCACCTTGACACAGCTAGGCTTTGGGCGGCAGGCCTCCACAAGTACTATGCTCTGCAGATTCTGGAAACAGTTATTAAAACAAGATGGAAGATACTTCCAAGAAACCAGTGTGAAGGAATTAAAAAGTATGTTGTTGGTCTCATTATCAAGACATCATCTGATGCAGCTAATGTGGAGAAGGAAAAGGTGTACATTGGAAAACTCAACATGATTTTAGTTCAGATCTTAAAGCAGGAATGGCCAAAGCATTGGCCCACTTTCATCAGCGATATTGTTGGAGCAAGCCGCACCAGTGAGAGTCTCTGTCAAAACAACATGATCATCCTGAAGCTGCTCAGTGAGGAAGTGTTCGACTTCTCCATTGGACAGATGACTCAGGTGAAAGCTAAGCACCTGAAAGACAGCATGTGTAATGAGTTCTCACAGATCTTTCAGCTCTGCCAGTTTGTAATGGAAAACTCCCAGAATGCTCCTTTGGTGCATGCCACTTTGGAAACATTGCTGCGGTTTCTGAACTGGATCCCCCTTGGCTACATCTTTGAGACCAAACTCATCAGCACTCTTGTGTACAAGTTCCTGAACGTTCCCATGTTCCGAAACGTGACGCTAAAGTGTCTGACGGAGATTGCGGGTGTGAGTGTGAGCCAGTATGAGGAGCAGTTTGTTACACTATTCACACTTACTATGATGCAGCTTAAACAGATGCTGCCTCTGAACACCAACATCCGCCTGGCATACGCCAACGGGAAAGATGACGAGCAGAACTTCATTCAAAACCTCAGCTTATTTCTGTGCACCTTCCTAAAAGAACATGGCCAGCTTATTGAGAAAAGACTCAACCTGCGAGAGACCCTCATGGAGGCACTCCACTACATGCTCCTAGTGTCAGAGGTGGAGGAGACTGAGATCTTTAAAATTTGTCTGGAATATTGGAACCATCTGGCAGCTGAGCTGTACAGAGAGAGTCCCTTTAGCACCTCCACTTCACCCCTGCTCTCTGGCAGCCAGCACTTTGACGTGCCCCCACGCAGGCAGCTCTACCTACCTGTATTGTCAAAGGTGCGTCTGCTCATGGTAAGCCGCATGGCTAAACCAGAAGAGGTACTGGTAgttgaaaatgatcagggggaGGTCGTCCGTGAATTTATGAAAGACACAGACTCCATCAATCTCTACAAGAACATGAGAGAGACTCTAGtataccTAACCCATCTGGACTATGCTGATACTGAGCGCATCATGACGGAAAAGCTTCATAACCAGGTAAATGGGACTGAGTGGTCCTGGAAGAACCTAAACACACTGTGCTGGGCTATTGGGTCCATCAGTGGAGCCATGCATGAAGAGGATGAAAAGAGGTTCCTTGTCACAGTCATTAAGGATCTGCTAGGATTGTGTGAGCAGAAGCGTGGAAAGGACAACAAGGCCATCATTGCCTCTAACATCATGTATATTGTGGGTCAGTACCCACGATTCCTTCGTGCACACTGGAAATTCCTTAAGACTGTTGTCAACAAATTATTTGAGTTTATGCATGagACCCATGATGGAGTGCAGGACATGGCATGTGACACATTTATTAAGATTGCTCAGAAGTGCAGGAGACATTTTGTGCAGGTGCAGGTTGGAGAGGTCATGCCTTTTATTGATGAGATCCTCAACAATATCAACACAATCATCTGTGATTTGCAGCCACAGCAGGTGCATACGTTCTATGAGGCTGTTGGTTACATGATAGGTGCTCAGACAGACCAGGCTGTGCAGGAGCATCTGATAGAAAAGTACATGTTGCTACCAAACCAGGTGTGGGACAGCATTATTCAGCAGGCCACCAAGAACGTGGACATTCTGAAGGACCCAGAAACAGTAAAGCAGCTAGGCAGCATTCTGAAGACCAATGTGAGGGCATGTAAGGCCGTGGGTCACCCCTTTGTCATTCAGCTAGGACGTATTTACCTGGACATGCTCAATGTGTACAAATGCCTCAGCGAGAACATCTCTGCAGCCATACAAACCAATGGTGAGATGGTGACAAAACAGCCTCTGATCAGAAGCATGCGCACTGTGAAGAGAGAGACTCTCAAACTCATCTCAGGCTGGGTCAGCCGTTCCAATGACCCACAGATGGTGGGAGAGAACTTTGTTCCGCCACTGCTGGATGCCGTCCTAATAGATTACCAGCGGAATGTTCCGGCAGCCAGAGAGCCGGAAGTGCTGAGCACTATGGCCACCATCGTAAACAAACTGGGCGGTCATATCACAACAGAGATCCCGCAGATATTTGATGCAGTGTTTGAGTGCACGTTGAACATGATCAACAAAGATTTTGAGGAGTATCCAGAGCACCGGACACACTTCTTTTACTTACTGCAGGCAGTGAATTCCCATTGCTTTCCTGCGTTCTTGGCGATCCCCCCAGCACAGTTCAAACTGGTGCTGGACTCGATCATCTGGGCCTTCAAGCACACCATGAGAAATGTGGCTGACACTGGTCTGCAGATTCTTTACACGTTGCTGCAGAATGTGGCTCAGGAGGACGCTGCAGCTCAGAGTTTTTACCAAACATACTTTTGTGACATACTGCAACACATCTTTTCTGTAGTTACAGACACATCTCACACAGCTGGTCTGACGATGCACGCATCCATCCTGGCATACATGTTTAATTTGGTGGAGGAGGGTAAGATTAGTATGACCCTCAACCCTGGAAACCCAGTCAGCAATCAGGCCTTTATTCAGGAGTATGTGGCCAACCTGCTTAAAACTGCTTTTCCTCACCTACAGGATGCGCAAGTGAAAGTGTTTGTGACCGGCCTGTTCAGTTTGAATCAGGATATCCCTGCATTTAAGGAACACCTGAGAGACTTCCTAGTACAAATCAAGGAGTTCGCAGGTGAGGACACCACAGATTTATTTCTGGAGGAACGGGAGGCATCTCTTCGCCAGGCTCAGGAGGAGAAGCACAAACTGCAGATGTCTGTTCCTGGAATTCTGAACCCTCATGAGATCCCAGAGGAGATGTGTGACTGAGCACACATCACActtgtaaacacacacagtgctggcACCTTAACAAAACTGGACACAGTGCTAATGGCAACAGTGTGTCtaggccgtgtgtgtgtgtgtgtgtgtgtggtgtgtgtgtgtgtgtgtgagattgatTACCTCTCTGGAGGCAATATCTGCACTTGGCTGTCTCTTGACCAAAACCAATGCCAATCTGTAAATGATCCCCTCACCCGTTGGCCCTTTTTACATGATCTCCGTTTTATATGgacacaatatttttgtgtaaTCTCTTTTTCATCGTTAACTCAAGCTTATGTTTGGTCAGTTAACTTGCAGTGTGTGGAGTTTATTTCTGAACTACACGTTTTAACTCCTGTCTGTTGCACCTTCGTTCTTTCTTCATGCTCCTCTAATTTCTCAtcatgtatttgttttgtatattgtatattaaattGAGTGCAGTTTTTTCCTCTTGCAGTAAGGCACGCATTAACTCTGTGATAAGGAATCTTTGCCTCCATAAGTAGTCTGCTACAGTTTCTTTGTCATTGAGTACTACAGGGCTGCATTCCACACACTTATGGTAATAGATATAAATTATATACGAATCTTAACGGTGTGAGTTTGTCAGGCTGTTGTACACAATATTAAAGCACTGAACGGTTTTATATTAACAGGAAATGATGAATCATTGCTGTTTAAGCATGCGTCAATTCTGTCATTGTCTGCCATTATTTCATAGTATTAGTAGCTCCTTATTCCTCATTTAACTTTGACAGTCTCTTGTGAGAGTTTAAAATATACTCAACAAATGTCCTGTTGAGTTTACACTAAATGCACAATTTATTTGAGACAAAATTATGcaaatattagaaaaataatacaTGCTTCTCTACAAGCTTCTCTagtctgtgtaaaaaaaactgctgccaACAGAACAggtcagtagtagtagtagtagtagtagtagtagtagtagtagtagtagtagtagtcaagTCAGTTAATCTAAACGGCTCTTCAGatgcttttacttttaatgtggtttaaggggttaaaagaTTAATACAAATCAGGTCTAAAATCAGTTTGGATTTCCTGCTTAGACATAGGCCAAGATTCCTTATCACTTTGTATGTGTAAACGGGGTGTACGAGTGTAATGTGTGAAAAGGAACAAGATGTGCAAGTTCTGCTCTCTGCAGGCTGCAGAAGAATGTTTCTCCTACTAGAAAGGAAGGGGATTCAGGAAGGAGTAAATAAAGCtttgatggatggatagatggatggatgagtgaaGTTCTGATAGATTCTGTTCGGTTTGGTCTCGTCAACATCCCAGTTGTGCCAGGCTCGAAAGCAATGCTTTGTGCAACGCAGTGGCTTTATTATGGACAAATAGTCACTATCAAATAGCATCTTTATTACCTGGGGAACACGTGGATGTTTCTtctttgtgttattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtcgcTTAACCgacatcagtttttttttggtttcctcAATGAGGACAGTGGCTCCTTTTGTGAGCTTTCATTAAGTcgaagtttaaaaaaagtggtCAAAATATTTATGGGTTTATTGTAGGCTGCGTCTTTATAACTGTATCTGAGCGAGTTAACATGAGAGCATGTATAgagatttttgtttgtttttgttttgtttatgtacTAATTTACTTTGTTTACCATTGCTGTAGTGCTACAAGACACTACTTtagagcaaataaaaaaaaaaacggtttacatttaaattttttattttattttttatttttaatttaacctGAATATAATGGAATCTAGATAAAACAGGAATTCTTACATTCAGCCGGTGGCGAAATCCCCTTTCTTTAAGTGTTACGTTTGATGTGAAACTTTTTTGAGCTGATTAAAGTCGAATGAATTTTATAACCATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107429 lncRNA upstream 4869 11991672 ~ 11997924 (+) True LOC111193192
XR_002650322.1 lncRNA upstream 5650 11991693 ~ 11997143 (+) False LOC111193192
XR_002650323.1 lncRNA upstream 128315 11834769 ~ 11874478 (+) True LOC111193193
TU107401 lncRNA upstream 133073 11865389 ~ 11869720 (+) True G79712
TU107399 lncRNA upstream 134084 11855773 ~ 11868709 (+) True G79710
TU107454 lncRNA downstream 32860 12073570 ~ 12076211 (+) False G79761
TU107636 lncRNA downstream 68099 12108809 ~ 12109104 (+) True G79903
TU107647 lncRNA downstream 115605 12156315 ~ 12161780 (+) True G79914
TU107660 lncRNA downstream 182567 12223277 ~ 12279505 (+) False LOC103044397
TU107661 lncRNA downstream 241135 12281845 ~ 12283581 (+) True G79924
XM_022672727.1 mRNA upstream 39919 11886236 ~ 11962874 (+) True kiaa1841
XM_007242500.2 mRNA upstream 179618 11810233 ~ 11823175 (+) True pex13
XM_022672726.1 mRNA upstream 364809 11577239 ~ 11637984 (+) True LOC103032219
XM_007238735.3 mRNA upstream 1187879 10801357 ~ 10814914 (+) True fam98a
XM_007238106.3 mRNA upstream 1238079 10727848 ~ 10764714 (+) True LOC103024809
XM_022672732.1 mRNA downstream 114213 12154923 ~ 12174659 (+) True LOC111193190
XM_022672716.1 mRNA downstream 148048 12188758 ~ 12261237 (+) True LOC103024200
XM_022672717.1 mRNA downstream 148050 12188760 ~ 12261237 (+) False LOC103024200
XM_022672718.1 mRNA downstream 148051 12188761 ~ 12261237 (+) False LOC103024200
XM_022672734.1 mRNA downstream 222411 12263121 ~ 12274900 (+) False LOC103044397
TU107406 other upstream 97408 11901095 ~ 11905385 (+) True G79717
TU107323 other upstream 447654 11554682 ~ 11555139 (+) True G79654
TU107028 other upstream 1189323 10807371 ~ 10813470 (+) False fam98a
XR_002650310.1 other upstream 2448265 9495449 ~ 9554528 (+) False spata17
TU106242 other upstream 3452825 8542128 ~ 8549968 (+) False G78817
TU107455 other downstream 24134 12064844 ~ 12076211 (+) True G79761
TU108374 other downstream 1885159 13925869 ~ 13952198 (+) True LOC103026193
TU108641 other downstream 2685217 14725927 ~ 14728799 (+) True G80648
TU108651 other downstream 2747892 14788602 ~ 14801837 (+) False LOC111193140
TU108802 other downstream 3134285 15174995 ~ 15181398 (+) True LOC111193203

Expression Profile