RNA id: XM_022672725.1


Basic Information

Item Value
RNA id XM_022672725.1
length 5738
RNA type mRNA
GC content 0.44
exon number 11
gene id jade1
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 12315094 ~ 12338375 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtagtgagaGGTTGTGTATGCGCGAGCAGGGGTGGGGAGGCGACAATCTGCTGCCGTGCCGCCTGAACTCAAACTGTGCGCAGCACCATTGGTTATAGCACCATAGAAAACGCAGCCAGCGCAGGACCTGCAGCGCGCGCCCAGCCATGTAGATTGGTGAGGCGTTAGGAGACAGCGGGTGCTGACAATGAAGCGAAACCGGGTGCCCAGCACCAGCGAGGAGTCTGATAATGGAAGTAACTGCACGTCCTGGTCTCAGATGTCAAACTCTCACAGGAGACGAGAGGGGAAGAGACCCTCAGAGGTGTTCCGGACGGATCTTATCACAGCGATGAAGCTTCATGACTCATACCAGCTGAATCCGGAGGATTATTATGTTCTTTCTGACCCCTGGAGGCAGGAGTGGGAGAAGGGGGTCCAGGTTCCTGTGAGCCCGCATTCCATTCCCAAACCTACAGTCCGTGTGGTGGCAGATAAGTCCTCTGCCTTGTTGTTCACTAGGCCGAAAAAGCTGATTCGCACGTGGGGAGCAGAGGCGTCTGCGCTGGGGTATGTGGCTATCGGGACACTGTCAGAGGGGATGTGTCGTTATGACCTAAATGAGGAAGACGTGGCCTGGCTAGAATTGGCCAACAAAGAGTTCAGTGCCATGGGTATGCAACTGCTGGATGAAAACACCATGGAGAGGGTCATGGAGGAGTTTGAGCGCCATTGCTATGACAACATGAGTCACGCCATGGAGACTGAGGAGGGGCTTGGAATTGAGTATGATGAGGATGTGGTTTGTGACGTCTGTCAGTCGCCTGATGGCGAAGATGGAAATGAGATGGTCTTCTGTGACAAGTGCAACATATGTGTTcatcagGCATGTTATGGCATCCTAAAGGTTCCGGAAGGCAGCTGGTTGTGTCGGACCTGTGCACTGGGCATCTCCCCCAAATGCCAACTGTGTCCAAAGAAAGGAGGAGCCATGAAACCCACCCGCAGTGGCAGCAAATGGGTCCATGTGAGCTGCGCCCTCTGGATACCAGAGGTGAGCATAGGTAACCCAGAGAAGATGGAACCCATCACTAGTGTGTCTCAGATTCCCAATAACAGATGGGCTCTGATCTGCTGCCTGTGTAAAGAGAAAACTGGGGCCTGCATTCAGTGTTCTGCTAAAAGTTGCCGAGTGGCGTTCCACGTGACCTGTGGCCTGCAGTTTGGCCTGAAGATGAACACCATTCTGACTGATGATGACGAGGTCAAGTTCAAGTCTTTCTGCCCCACTCACTCTGGGATGGACTGGACCGACAGCTATGCAGGAGCAAACGAGGATGGAGGGATCAGGGTGAGAGGGGTGAATGCTGCCGACCCGTGCGGGGCGCACCTTAGCGAGCGAAAGCTTCGTGTGCAGCAGCTGGAGGATGAGTTTTATCGCTTTGTAGCTCCTGATGAGGTTGCGAAGCATCTGAGGTTGCCGGCGGAGACGGTGGACTTCCTGTTTCAGTACTGGAAGCTGAAGAGGAAGGCCAGCTTTAATCAGCCGCTCGTCACGCccaagagagaggaggaggaaagcCTAGCGCGACGGGAGCAGGAAGTACTTCTCCGCAGGCTCCGCCTCTTCACACACCTCCGCCAGGACCTGGAGAGGgtgcgGAACCTGACCTACATGGTGACCCGCCGGGAGAAGATTAAGCGATCCGTGTGTCGGGTGCAGGAGCAGATATTTCATCACCATGTCAGACTGCTGGAGCAGGGCAGACTCTCTGGTGTATCTTCAACCAGGCGACTAGAGGAGGCTATGTTCTATTTCCGGGCCGCTTCCATGTCTCTGCAGCCTCTTAGGGGTCATGCAGCTCAGAACAGTGCCATTTGCCACTCCCAGAGGAAGAACCTCCTCCGTCACGGAGCCTCCAGAAGAGCCCACTGCGAGGGGGAGGAACCTGCCAAAGTATCCAGCACAGAAGCTTCCATCTTGGGAAAGTTCTCCAGCCCGGAGGGGTCACGAGACGCTGGCTGTGTCGGCACTGAACGGGTTCAGAGGAGTGAAGCAACAGATGCAGCTGCAGCCGTGTACTCTGGGAGCAGAGGGAGACGGGGTGAATACTCAAGGAACGAAACAGAGCAACCCCTAGAGGAGCAGAGGAGGAAAAGGAGGAACATGGCATGGGAGCCTCTGCCAgtaagagaaaaacacaaatcagGGTCAAAAGTCATAGAGGAGATGATGCAGAATCGCATCGTGGATCAGAACAGCGGGACTGAAGCGGAGATGGAGGTCGACAGCAGTGAGTCCGAGGCTAAAAGCAGCTGTCCGGTAACAGTGCAGTCCAGGTATAATGGTTCTCTAAGGAGGACGAGTTCTAGTCAGGGAAAATTGTTGGCCAACGGTACGTCAGCACAGCACATTAAAAACTGGGGAAGCTTCCGGATTCCGAAACGCAGCGACAGGACATCAGGAGGAGGACACGAGGAGCTGGAGGGGCAGGACTTTACCCATTCTCCTCATGTCAGCTCTCTGGATGAGAGCCCCACCCCTTCCACCTCCCCTCCAATCAGAACTCGGCTAAGGATGGGGGCTGACAGTCGCAGCTTCGCACAGGAAACGGAGCACAGCCAATCGGAGCAGAAGAAGAGATGCCATGCCCAGCGGCTTAGGAGTCACGATCCAATCACGCAGCGCTATGGGTCAGAGGTTTTACGCCGTGGCGTTCTCGCATCATAAGAGCGTCAAAAAGACACTTACCGAAAAAAACTTTGAAGTACCGAAGTTACGTGTCAACTTATGAAAAATTTTTCTTGTGTAATCCAAATAAGTGCAGCACTCTGAGGAGCCACATGtaagatttttcttttacttacattttaaatggtctttgTAAGATCTTCATACATCAAAGGAGTAAATCTTAacaataaaatcacatttatcaCAGATAATTTTACAGATCAACTCTCTTAAAAGGAGAACAGTACtgatttttctacattttcagAATAgttcacagtggtggtgaatggaGTAAATGGTAAGTTTGCCACTTACCTCGGGTGATATGTAAGAAATGTTATATCacactatttaaaaacaaattcaatGTTACACagtatttgatattttataagACAACATGAATCAGTAAAGCAGGCTCTCGAACTGCTGTACACATAACATCCTGTTCACAGTACAGCACTACAGCAATTGTATGTGTTCAGAAATTGAATGTAGAAATTTAGAAAATTCAGTGCAATTTCCCTTTAAAGATTGCTTCACCGAACAGTTTCTTCtgccaaaaaagaaaaggtgattATACATATACAAACCGCAAACATTGACCTACAGCTTTTCTAAAGAATAAGCTAATAATGATCTATAAATGCACGCATTGGACTCAAAACTCTGTCTGAACTTACATGTGACTCCTTATAAAACTCTGTAAACGGacagatatttatttttctattttgtacTTTTCTCCATGCTGCTTCTTTTTCGTTTTGTGCTGTTTACTTTCCTGAGCTGTTTTGTCTCTCCCCCCTCTTTTCTCCCTTCTTGTTGCCCAACAAGTAGTGCACATGACAATGTCTCAGAGGCTGGCAGATAAGCTATAATCAAAGACAGTCAAAGTAGTCtgggttattattttttagttgttaaaaaaaactgaaaacataaaaaaaaattgttttcagATGTAACTGTTTATCTGACGTACTTATGAGCTCTGGTATTAATCAAGTGGTGAAACTCACTGATGTGTACAATCATAAGTAGCACTTAGTGCAGTGGTTTCCAGTCCCAATGTTGGAGACCCTGTGCACTTTTTTGTGTATAAGTTGGGGAAGCGTGCAGTGCAACGGGAACCACTGTTTTAGTCAACTATTTAGTATGTTGGAAGTCATTATGTATACTATGGCCAGCCATACATGGATCAGACTAGTAGTTATAGGATGTTCAGCACTTAATTGTCACCAATAATctgaaagtttttttgtttttttccctctttggGGACTAATTCCAGAATCtatccattaaaatatatttatggatttatttattttctttaataggTTTTTTATATAGAGATTCCATGGTGTTCTGTCATTATGGCATCTTTCTCTCCTCAGGTAAATCTTTATTTTgtgcatctttttgttttggTTCCCCCTCAAAAAAGATTCTTAACAGAGAGATACACCACTGATGGTGTAATCGGGCCCACAAACACTGTAAATAGACTTATCTGTCTAGTGGCCCAAATGGTTCTCAAATGTCAATGTTCATAACACAGTGGTGAAGGTGGGATAAGAGTATTTGTTCCAAacatactactactaataataataataataataacagaaatgtATTGCTTTCGTTTAccaaattttatttggaatagtTAGGAATATGGAATATGTACAGCAACTTGACTAAGCAAAGATCTGTTCCCCAAAAACACTGTGGCTTTAGCTTAAACAGGCTAGTGTGGCTAACAGTGAATAGAAGGTAAAATACACCATtagcgtcttttttttttttttttaaagctaactGGTGCTTGTTCTGGTGgtttcatctattttttttgtattcctATAAAAGACTAGTTTGTCCAAACCCtaacaaaatgttatttaattagctaatgctattttCCAGCTGTCTTTGTTAGCAATCTTTAATAACAAGTGCTTTTTGAGTAGCATGTTGACAGGTCTATTCCATAGTTATTGTCTAAATGTggggagaaagaagaaaaggaaaaattaGGGATTGGTGGAATTTTTGCCCTCTCTGCCTATCTTTTAGATCACCTCCAATCTAGTCCTGTTCCCATTTGTGTATCATTAACTGAAGGTCTTGTGTTATGAgctggtattaaaaaaaacgtgTGGGAGTTAGTGTTCAGTGGCCTGTACTAGGAATGcatcaaaataaaagaataatttcAGTTGCTGAATAATCATTGCATGCCTAGCATCTCTAGCTCCTTACACTGGCCATTTTACCACAGTGTTTTTGGGGACGCTGGGTGTAGACTAGTCTTTGATCAGCTGTGAAACAGATGGCTGGTCCTAAATCAGCACTTCTGCTGTGAGATGTCTGACATGCTACTGCAGACCTGTACAGATGACTCTCCGCTTGATTGTTAACTTGTGACTGGATTACACATGTGAATTTTTCCAGCTAACAAGAATCACAAGTCAAAGAGGAATTATTGATTCTCAAAAAACTCAACTCTGATGTAAAAATACCTGCATCTCTTCAGCATCCCTTAAGCTAGAAACATTCATGTTTGGTTCAATAATCTCCATTTAACATGAATCCATATtgcactaagaaaaaaaaagaatgaaaaggaAAAGTATCGCAAATATCTGAAGTCATGCAAATGAGTTTTAAAGAATGATTTCTTAGAGAGCTTGAAAGGACTTTAAGCTTCGCTTCTTGTCAGAGTTGCCTTTGGTCAGTATAAATTTAGAATGTTTGCACTTGGATGTCTTTAtttgtaagtattttttatgttgtttaggCTAATTGCAAAACAGACTTCGGTGTGGTCCGAGTCAAATCTTGTGCCTGTGTGGCTTTGGTTAACATGTTGCACTAGAATAGAGCAAGGCAGTGCAGCTTGACTATTGTTCTCTAAAAGTTATTTTTCACATACAAAGAGACCTTTTATATGAACAAGTGCTGCTGTATTTTTTGTTATGCATCTATTTTGTGAATAAACCCCTTTGAGATTTAA

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0060828 regulation of canonical Wnt signaling pathway biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K11347 JADE1, PHF17; protein Jade-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107661 lncRNA upstream 31513 12281845 ~ 12283581 (+) True G79924
TU107660 lncRNA upstream 35589 12223277 ~ 12279505 (+) False LOC103044397
TU107647 lncRNA upstream 153314 12156315 ~ 12161780 (+) True G79914
TU107636 lncRNA upstream 205990 12108809 ~ 12109104 (+) True G79903
TU107454 lncRNA upstream 238883 12073570 ~ 12076211 (+) False G79761
TU107798 lncRNA downstream 174627 12513002 ~ 12542649 (+) True G80024
TU107800 lncRNA downstream 184329 12522704 ~ 12523100 (+) True G80026
TU107805 lncRNA downstream 190251 12528626 ~ 12531849 (+) True G80028
TU107802 lncRNA downstream 190587 12528962 ~ 12531849 (+) False G80028
TU107806 lncRNA downstream 190587 12528962 ~ 12531849 (+) False G80028
XM_022672728.1 mRNA upstream 2156 12290397 ~ 12312938 (+) True LOC103034755
XM_022672730.1 mRNA upstream 2156 12290397 ~ 12312938 (+) False LOC103034755
XM_022672731.1 mRNA upstream 2156 12290402 ~ 12312938 (+) False LOC103034755
XM_022672733.1 mRNA upstream 35588 12263125 ~ 12279506 (+) True LOC103044397
XM_022672734.1 mRNA upstream 40194 12263121 ~ 12274900 (+) False LOC103044397
XM_007244576.3 mRNA downstream 195482 12533857 ~ 12549090 (+) True exo1
XM_007244578.3 mRNA downstream 226737 12565112 ~ 12579232 (+) True LOC103045432
XM_007244580.3 mRNA downstream 402984 12741359 ~ 12748024 (+) True LOC103046040
XM_015604607.2 mRNA downstream 471292 12809667 ~ 12820803 (+) True LOC103025054
XM_007244586.3 mRNA downstream 633056 12971431 ~ 12986601 (+) True LOC103047786
TU107455 other upstream 238883 12064844 ~ 12076211 (+) True G79761
TU107406 other upstream 409709 11901095 ~ 11905385 (+) True G79717
TU107323 other upstream 759955 11554682 ~ 11555139 (+) True G79654
TU107028 other upstream 1501624 10807371 ~ 10813470 (+) False fam98a
XR_002650310.1 other upstream 2760566 9495449 ~ 9554528 (+) False spata17
TU108374 other downstream 1587494 13925869 ~ 13952198 (+) True LOC103026193
TU108641 other downstream 2387552 14725927 ~ 14728799 (+) True G80648
TU108651 other downstream 2450227 14788602 ~ 14801837 (+) False LOC111193140
TU108802 other downstream 2836620 15174995 ~ 15181398 (+) True LOC111193203
TU108900 other downstream 3225612 15563987 ~ 15583331 (+) True G80857

Expression Profile