RNA id: XM_022672726.1


Basic Information

Item Value
RNA id XM_022672726.1
length 6917
RNA type mRNA
GC content 0.41
exon number 15
gene id LOC103032219
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 11577239 ~ 11637984 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTCCAGCTGCGTGAGGCTGCAGAATCTGTGGAGAGCCAGGGgtcgtttttacgcacggaagtCTCTCCTTACAGATCAAACATTTGTTATAGATTGCCTGGGCTCTGCTTActttcaccacacacacacacttaaacccTCAGGAGCCCGCGAGCACCGGAGGGTCATGGCTTGGTGAGGAGAAGCGCGTATCGAAACTGGCTGTGCTCGTCGCCGCGTCCGTGCGCCAGGCTCTCTGCTCGCGCAGCTCTCTCCGCGCTCGTGCCCGGGCTGAAGATGGGATTATTTGACGCGTTCCGGGATGTGGGGCTGCTCGCGTGGCTGCGGGAGGGCAGGCAGTCCCGCAGACTCATCCTCCTCATCGTCTTTATTGCGCTGCTGCTGGACAATATGTTGTTGACGGTGGTGGTCCCTATCATTCCCAGCTATCTGTACACTGTGGATGATGCAGCATCCAATGCAGTGAGGAAAAATTCCTCCAGCTCCCCTTCCGGCACCTTCCAGACCATTGTATCTCTGTATGATAACACTACACGCTTGACCAACATCAGCCCGCAGTTCAACACTCCCACCATGCCCCCCACCACGACAGTCACCTCCGCACCCAATGCCTCTAACTGTCCCAAAGCGGATGACCAGCTTCTGAATGAGAATGTGAAGGTGGGGCTCTTGTTTGCCTCGAAGGCCACCGTCCAGCTCATTACCAACCCCTTCATAGGACCCCTAACCAACAGAATAGGCTACCAGATCCCCATGTTTGCTGGTTTCTGCATCATGTTTCTCTCCACAATCATGTTTGCCTTCTCCTCGAGTTACACGCTGCTGTTTTTGGCTCGGTCAATGCAGGGCGTTGGATCCTCCTGCTCTTCTGTGGCAGgtatggGGATGCTGGCGAGTGTGTATACAGATGATGAAGAAAGAGGAAACGCTATTGGAATTGCACTGGGTGGACTTGCTATGGGAGTGTTGGTGGGGCCTCCGTTCGGCAGTGTAATGTATGAGTTTGTGGGGAAGACGGCACCGTTCCTGATCCTGGCAGTTCTGGCAGTATTGGATGGAGCTCTGCAGCTATTTGTACTTCAGCCTTCAAAGGTGGAGCCAGAGagtCAAAAGGGAACATCTCTTATGACCCTCATGAAAGACCCTTACATCCTTATTGCTGcagGCTCTATATGTTTCGCTAACATGGCCATCGCAATGCTGGAGCCTGCCCTGCCCATCTGGATGATGGAGACAATGTGTGCCAGAAAGTGGCAACTAGgtgtgGCGTTCCTTCCTGCCAGTGTCTCATACCTGATTGGAACGAACATCTTTGCAGTGCTGGCGAATAAGATGGGAAGatgGCTGTGTGCTCTTATAGGAATGCTGCTGGTTGGCATCAGTATTCTCTGTGTGCCTTTCGCAAAGGACATCTACGGACTCATACTGCCAAACTTTGGGGTTGGTTTTGCAATTGgcaTGGTGGACTCCTCCATGATGCCAATCATGGGGTACCTGGTGGATCTGCGTCACATCTCTGTGTATGGAAGTGTGTATGCGATCGCTGATGTGGCCTTCTGCATGGGCTTTGCATTTGGGCCCTCGGCTGGTGGAGCTATAGCACGCAGCATTGGGTTTCCCTGGTTAATGACCATCATTGGCATAGTGGACATCCTATTTGCACCACTTTGTTTCTTCCTCCGCAGTCCACCTGCTAATGAGGAGAAAATGgcCATCCTGATGGACTCCAACTGTTCAATGAGAACACGTTCCTACTCTACCCAGGGGTCCAGTTATCAGATGGGGGACGATATGGACCCAGACAGTCCAGAGTAATTAAAACccagcccccccccctcccttttGCTCCGACACATAACTCCCCATGAGCCATGTATGTGCCCTTCTAGGTTCTATTTTGTTGTATTGCAGAAGGAGTGTGGGGAAACAGAGACTTTATAAGAACCAAGTGGCTGATTTTGTGAGAAATGTCCCAGTGTTTGTCCGGCGCCGCTCTGTGACGTTAGCATTCGTCTGTTCTGCTTAAACCAAAGCCGTTCTCATTGTCCTTTAAACACATCCAGCCGACAGCCttacctgtacacacacactcacacacagtccTGGCACCGGCCTTCGGAAACAGGGTCTTAACCACTAAAGCCACAAACAGGGATAAGCTACGACCAGATCACCTTCAGAAAGTGGAGCTATGTgaactccacaagacctctgaaggtgtaCTATTTACCTGGCACTAACGTGAGCAGCGCATTCTTTGGATCTCCTAAGTTATGAGGTGGGCACCTTTGAGCATCAGAACATGACAGATTTGTCAAAATGGCTCAGATTCAACTTCAAGAATTGACTGCTCATTCTCTGCCTAATATATCCACCCTCAGCCACAAGCAGATCGTCagtattatttactttatatgtTATCCTTTACTTTATAGGCAAATTATTTACAGGGCCTATTTTATAAATACACTGGcattccaaaagtcatgggacaactGTGTGTGTAAACTGATTATAAATTGGTACCTCAGGAGGTGGCTTGGGAGTGCCCACACattttgtgaggtgttatcttgtgagtgaggttggtTAAACACTGAATTATGAGATTGAGTGAGGCCTGGGTGCCAgaggatgggacattccatttgcAAATTACATgtcataaaaggcattaccaccctcAGTGGACAGCATCAGGTGGGTAGTGATCGTGACCAGTGTCTGGCTAAAAGTGTCTGTGTTGACAGACAATCAACTCATCCACATTAAATGCAGAAGCCCCCACACACATATTCCACTGGTCAGTGTTATGTTATTTAGTGTCCATGGAATATGACACAAACCTAGTGTCAGCTTACATTACATTCAGTATGTCAGtgtcaataataattaaacatatacagTTTACATTTCTGTGCCTTTTAAACTGACATATGTAAATaacctctgttctgattggctgccctgtTTGTGCCTTGTTAAAAAATGCAGTCCAGGCTGAAACACTGCTTATAATGTATAACATGGGTGGGAGGAGTTACAATGTAAATGTGTTGGTCGCACAGGTTTGTGACCTCACATAAgcaatgcattcattttcaagtttttttttatgtaaagagTGTAACGATATGCAAAGGTTGAAACCTGTTGCAGTTTATACTAGTATAATGCATCTAGTGTTGTGTGATAGAatcactttaaaacatttaaatctgCTATTCCAGCTAAGCACCTGAGAAAAGGCTGCCAGTTTGTCGTCCTTAAATCCCTGATTGTGGCTTTAAAATCCGAACATCATGGGTACCTGTACTtctgtagcatcacagtgcacaggGTTATGTTTTGTATATCAACATTTCTAGAAGACATTAAGATGACCTGGCTAAAGCGAACCATTAGATGTGAAGAAACAACTTTAGAAACCTCGAAATTAGTTACATTATGTAAATTAAGTGTTTGCATGTAAGTTTGTTTTCTTAAGACGGCTGAAATGGATCACATTTTACCTTGAAATGGCCTTAAAGTGTTTCCTTTCCATAATCAGAGGTGGCTGTCCTCTGACAGTAtggtaccttttttttaaaacatgagtGGACGGTACGGCAGAGGGCCTTAAAATGAAAAGCTCACACCTGGGAGCTTCTGCAGCTTCACCTGGTGGATTGGTTATAGTGCTGTCTGTTCAGGGTGAACGCCTCTGATTTAGGATGTTCACATTGTGTTAATGAGAATGACACTTGCAGATGTGTTTGAGCTGTTTGAAGAGAATATTCACTGAACAGAGTCGTTCCTCTTTAGAAAAATTATGGAAAACATTGCTTAAAAGATCACTATGGAGCATGCTGGGTGCATTTTACAGATACATCAAACTGATATTCTAAGACTGGgtgaaattgtaaaaaaaaaaattctcactattctttaaatatataagttaTTCTTAATTATGATTTTAGTAGTTATTTGTAAACAGACAGTCTCATGTAAAATAtctaatattacattacattactaaaatatctaaatttacaaaaacataAGTCAGGGCCATGGGCTTTTTGTCTTCAAAAAATTAGTTTATATTTGTAAACAGACAGCATTACTTTCCTTGTACATTTCTCGATAATCCCATgttgaaaattgcattaaaacagtaatgtaattattccaaataatttaattaatatccCAAAGAACACAATTTAAAATCCCAGGGCCATGCAGCTCTACCTTCAGCATCCGGAGCCTGAGAGAGCATAGCTGGCACAACTGGCAAACTCTGGGGGGGTATTGCATTGcaagtgatgggggagtcctagtgagtgggagAGTTAATTTTGTTTGTGAACAATTACTGTTACTAATAAAATTTTAGCATTTTGATATGTAAAAATAACTCAGTAAAATGTAACTCAGATAAAttgaaatgtaaattaaaatgtatcaaGGTGATATATCAACATAATAAAGAGAACAATTAATAGTTCAAATAAATCATCAAACTAAATCTATTTTAGTATATAATTGATATTTTAACCCCAAAAATGGTTATCAGTCCCTTAAATCCATCCCCACAATGGTGACAAaccatgttcatttttaaaatacagctgTAAAGTATCTTCCTACAATACCTCAGCTTGTtagagtgtattttttttatttagtaagtgtataaagcatatatatatatatatatatatatatatatattatatatatatatatatattaatacatgcTGTATTTACTCTTAGTAAATACAGCAAATTAGTAAATACtcttagtaaatatatattaatacatgctgtattctgtatttactCTTAGTAAATGTCTACTTagttttgttaaaatatatatttgtttaaaacatgttcaggtgtacaatattttaaacagacACCCTAAACTGAGGCTCTTAAAAAGCTGTTGTAACCCAGCATCTCCATGACGATGTGCTTCAGGTGCTCTGCTCCTCATGCGATTTCTGAACTCGATGGCCTTATGATAGCTTCATGCTTCCTGTACGGCTGGAGCTGCAGAACAGGAGGTCTGAAAAAAGGAAAGGTGTGATATGATTATAGTCAGAGTCTTAAACAACAGCACATCCACCATATTGTAATCAGATCACCCGAATGCAGCCAGTGGCCAGTGCAGGCCTGCCATGTGCTCCTCATTCACTTCACCTGTGGAAACTCCGCTATTACACACCTCTCACACTGCAAACAATATTTTCAATCATATGAAGCCAATTTGGTTGGAGACAAATGAAGACAGTATGTAACAGGCTAGTTCTATGAACCACAGGTTTAGCAAAATTAGGAGGAAATGGAGGAAATTCATTTGAAAAACTCCacctgtatttgtattttttatttaccagCATTGCAAAATATGGGCTGAATCACACACCATAAACCAGAGACTAAATACTGATCCTAATAGTGTGGCAGAATAGTCACGTGCTAGCCTATTTTAAACAGCCCCAgagttttttttgcagatttatTTCTACACTCTATGATTTTTACTGTCTAAAAAATGGTTTTTTCAGGACTAACCttcccattattattattttttttctctaaaccATCAAATTTTTTATTTCCCCCACAAAGACCAAGTCAATAAAATATGTATGGGCATGTATtattctaaatataaaaaatatgtttgaaatatatttgaaatgtttttttcacatataAAGTAACACATGCCAATATATTGTGTTTCTATGTGAAGTACTATCATCTCACCATTTGCTACATAAAATGCTTCCAAAATAAATTTGTACAATGACACTGGAAATATAACCttcaaaatataaaagtgtGAAGTAGTGTGGGCTAGCTTTTAGCTTTGATATTGTATTAACTATTCCAATCCTGGCTCCTTAATGACCGTGTTTTTCATAGGATTCAGGGGCATTCAGAgaacaaatgtacaaatgtataaGAAATATGTCCAATGTGCATTATCTCAAGTTTTGGCGTGATTGCGTAATTGTCTGTCAGGTAGTTACATTTCGCAGATTATGAGTGTGTGAACTGCCTGACACGCATGTGTCTCATGCCCAATTCATGAGACTTGAGAGCTGTATGAAGAAATGCTAAGCGCAGATATGTACTATATCTTAAAGTTAAgcattattaaattacattcaaCATGACAAAACTAAATCCATACTGCCCTTCAAAAGTATTTGAATGGAGAGGCCGATAACAttgtttctgctgtagactgaaaatttgtgtttgatattaaaagatgaatatgtaACAATAGATCGACATttcagttttaatattttatacatatttatatctaaatctgatacacagttcagaagatagtaccttctgtctgaacccacctaTTTTTCTTTGTGAGCAAAAGTgttggaacatgtgactgtaaggtgtgttttgttgcccaggtgtgtcctcATGCACTCCCATGGGACAGAATTTTAATCGGACAGCTTTACAATTTCATGCAGTTTCTGTGTGTGGGAGAACTCACAGATTCACACAATTATCATTATAAATACAGCATCCTGAGGCTCACCTCCCAATTTCTCAGCAGTTCACACCTGTAAGAATAAACACTGTTGTgtaatttatttctgttttgtatcTCTGAGGTCTGTCTCGAGGTGGTGAACGTGTGTGTGCCTATGTTGGTGTGTGCCTTCATATATATCTGTCCTCTGTTTTTGTGTATATTACGTATCTCCTTCCATGCAGTGCAAGGACGTTTCAGCAGTTTTATATCCTGTATAAGGTCCTGTAGTCAGGATTCACACTGTCAGATTTACAGTATGTAACTCTATGAGGTCCATGTAAGTACTTGGTgggacaaataataataaaaaacatgaataaagaaATCAATAAATGTTG

Function

GO:

id name namespace
GO:0015893 drug transport biological_process
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K08155 SLC18A1_2, VMAT; MFS transporter, DHA1 family, solute carrier family 18 (vesicular amine transporter), member 1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107328 lncRNA upstream 17130 11559780 ~ 11560109 (+) True G79659
XR_002650327.1 lncRNA upstream 30465 11546280 ~ 11546774 (+) True LOC111193197
XR_002650326.1 lncRNA upstream 31222 11544676 ~ 11546017 (+) True LOC111193196
TU107312 lncRNA upstream 40916 11535792 ~ 11536323 (+) True G79643
TU107308 lncRNA upstream 44375 11532334 ~ 11532864 (+) True G79640
TU107359 lncRNA downstream 53832 11691816 ~ 11692164 (+) True G79683
TU107360 lncRNA downstream 62696 11700680 ~ 11702374 (+) True G79684
TU107370 lncRNA downstream 109060 11747044 ~ 11747579 (+) True G79692
TU107373 lncRNA downstream 135706 11773690 ~ 11784149 (+) True G79694
TU107374 lncRNA downstream 141840 11779824 ~ 11784827 (+) True G79695
XM_007238735.3 mRNA upstream 762325 10801357 ~ 10814914 (+) True fam98a
XM_007238106.3 mRNA upstream 812525 10727848 ~ 10764714 (+) True LOC103024809
XM_022672473.1 mRNA upstream 910565 10664458 ~ 10666674 (+) True LOC111193128
XM_007238109.3 mRNA upstream 1024031 10538079 ~ 10553208 (+) False LOC103025860
XM_015603051.2 mRNA upstream 1215194 10352414 ~ 10362045 (+) True LOC103027561
XM_007242500.2 mRNA downstream 172249 11810233 ~ 11823175 (+) True pex13
XM_022672727.1 mRNA downstream 248252 11886236 ~ 11962874 (+) True kiaa1841
XM_022672723.1 mRNA downstream 364809 12002793 ~ 12040710 (+) False LOC103021592
XM_022672721.1 mRNA downstream 364810 12002794 ~ 12040710 (+) True LOC103021592
XM_022672719.1 mRNA downstream 364810 12002794 ~ 12040710 (+) False LOC103021592
TU107323 other upstream 22100 11554682 ~ 11555139 (+) True G79654
TU107028 other upstream 763769 10807371 ~ 10813470 (+) False fam98a
XR_002650310.1 other upstream 2022711 9495449 ~ 9554528 (+) False spata17
TU106242 other upstream 3027271 8542128 ~ 8549968 (+) False G78817
TU106236 other upstream 3027271 8543185 ~ 8549968 (+) False G78817
TU107406 other downstream 263111 11901095 ~ 11905385 (+) True G79717
TU107455 other downstream 426860 12064844 ~ 12076211 (+) True G79761
TU108374 other downstream 2287885 13925869 ~ 13952198 (+) True LOC103026193
TU108641 other downstream 3087943 14725927 ~ 14728799 (+) True G80648
TU108651 other downstream 3150618 14788602 ~ 14801837 (+) False LOC111193140

Expression Profile