RNA id: XM_022672730.1


Basic Information

Item Value
RNA id XM_022672730.1
length 3221
RNA type mRNA
GC content 0.40
exon number 9
gene id LOC103034755
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 12290397 ~ 12312938 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGGTTAATTTCAGTCTGACTTGGGCAATAATAGACCTACAGAGGTGTTCTGAAGTGGGTCCTCTCTATTGTAGAGACTCTGTGGCGCGAGCGGAGAGCTGTGCGGAGGTTCTGGTCGCTCCGGATTTCTTGGTTTCTGTTTACACGCAGCTTTTCGGCTGATGTGATTCAGAACTGCTGTAATTCGGATTAAATCGTGTCAGTATTCGTGTAAACCGCGCTGGAGGACAGCAGCGCTCGGGCTGCGGTTTCGGGCTTTTCCCACCATGGCAGAGCATCTCTCTCAGAGTGAGCTTGACTACCCTTTCAAATTGCTGGAATATTTCAATGGCTTCAGAGTGTCTAAGGTGATTTTTTCAGCATGTGAGTTGGGGGTGTTCGATCTGCTCCTCCACTCACAGAAGCCCTTGAGTGCAGAGGAGGTGTCGCATGAGCTCCGCACCAGCAAGGACGGCATGAAGCGCCTCCTCGATGTGCTGGTGGGCATCGAGATCTTGGAGGTGGAGCTTACAGAAGGCACAGCACATTACAGCAGTACTGACGTTGCTAATCTGTATCTGGCCAAGTCCAGCCCTAAATCTCTTCACGACATGATCATCTACCAGTCTCAGACCATCTACCCTCTCTGGAACAACATGGTAGATGCTGTCAGGGAAGGAAAGAACCAAAATGAGAAAACCTTTGGTCTCTCCTCAGAAGACATCTTCTCTGCAATCTACAGGTCGGAGGAAGAAATGCTGAAGTTTATGGGTTTGATGAACTCAACGTGGATCATTGATGGTCATGATATAGTAACAGCCTTTGACCTGTCCTGCTTCAAGTCCATAGTGGATGTTGGAGGCTGTTCTGGAGCTCTGGCACGTGAGTTAGCAAAAGCCTACCCTGCTTCCACGGTTACAGTTCTGGACCTGCCCAAAGTGGTCCAAACAGCCCAGAAACATTTCATTCAAAGTGATGACACCATCCGGTTTCAGGAAGGAGACTTTTTTAAAGAAGACCTTCCTGCAGCTGACCTGTACGTTCTGGCGAGGATCATTCATGACTGGAAGGAGGAGAAGTGTTTGACTCTGCTGAAGAAAAttaatgcagcttgccatccaGgGGGTGGTGTTCTGCTTGTAGAAGCTTTGCTGTTTGAGAACCACAGAGGTCCAATCATGGCTCAGATCTTCTCTTTAAACATGCTGGTCCAGACAGAGGGCATGGAGCACCCACCttcacaatatacacacatgcTCACTGCAGCCGGATTCACTGATGTGCAGGTGTGCAGGACGGGCAAGTCCTACGACGCCATTCTGGCTCTCAAATGACCTTCACCATACATCCACTGATGCTGTGTCATGGTTGGATCTTTAGTACacttcttgtaaaaaaaaaaatctataaacgTCCAGAACCTACCTTACACACTTCAGATGCACTTGGATATAATTTGGTAGAATTATTATAATAGATTATAAAGGGACCTGTTCAGATTAATGCATCATGTTGCTTTTTTGTACACACTGGGACCAGGATCGCTATATCAATTTGGCTTTTGGCCCCCTGCACAATTCTTAAACACATCATTAGTTACTTATAGGATTGAACTGGAGATATCAGTAGCAAGGAGTTTTAGACCACTGAGGTTAAGTAATGGtgtcaaatcagaaaaaaaataagattccaATATTGGAGGGCTAAAGAATTGCACATTTAAGTGTTTttccacactgaacacacaaatCACGCACATATTGAGCCACAGGTAGCCACACTAGAGCCaagtattgttttttattggggTAATGGCTTATCagagtccccccccccccaacttaACCTAAAAATACCCTTTATGGACCAAAGTTTTGAGGCATGTGGTTTTTCCCTGTTTCTTCCTTTTAGCATTAGACAAGAGACTTGGTGAGGACAGGATGTTCATCACCACCCCAACTTATCCCATCTCTGCATAAACTATTGTGCCTTTGCACATCTATTGTATTGTAGTGAAGGGTGCAAATTCAACTAGCtgcatgcattcattagaaggggtgttcacaaacatttggtcAAATGGTATGTGTTGGTTATACTGAGAAGTTTGAGAAATGACTTTAAATGACACGTGCTATGAGACGTACAGACGCGTGGGAACAAAATTAAAAGCTTAGCCATAGCCACACTTAGAGTATGCATTTGCACCACAAATGGttgaatttattaatttgtagGAATGTCCACCATTTTGGCATATATATCTTGTTTGCTTCTTTAGTTAATGTTAACTGAAATTAAGGTGctaaatgtagctaacaagtaatggaatTATGTAATCTAGCTAAGATAAAAAGCTAACAGGCTCCAATAATGTTTAAAGACACACTCCTAACTCTCacatattaaaaattatatgtgATTTAATTGTCTGTTAAGAGCTTCATATGTCTGCAGTCACTAAATAGAGCTGTTAAAATAATTCACCACTGTTAGATAGATGCTTCTACAATAGGTAACACCCCATTATTAGGCTAGTGAAAGTAAACAACAGCTAATTGTAAAGTAAATCATAAGGTTATAAGAAGAAGAAGTCATTCAGTAATATCTAAATTCTTAATTATGTTGTTCCTTTACTGTTTAACTCACTCTTtggaaatgtatgaaaataaccaaactttatttttttcttaatgtactgcatttttttatatgttttaaaatcacaCAATATTTGAAATGTATCTCAATATAAGCAAAtacatgaacattttttttctgtaggaaTGGACAGAGATCAGACTTTAAGGCTGAGATTTTTTTGagtctttttttaagaaagagGCACAAAAATAATTTAGGGTTGAATTGTATCAGTGTTCTGTTTTACTTGATTTTTTGTATTCTAGCATGTTTCCAATGCATggtaaaaaaatcatgtttatgCATGCTAAAAAATATACACCCTTTCTATAGCCCACTCTGGCCCTGGACTTTATGGAGTGATTTCCTATTTTACAAGAGCTCCTCTGTCTGATTTGACCATGTCTTCAATTCGACCTCCTCCTAGTACTTGTCTCAAACACTCCATTTACCTCCAATATTTACCAAGTGTCGCAATATAATTATCCCCTTCTTACTGATCATTTCTCATATGGAGTTACTTGAATTGCAATTGTTACACTGTTTTATGTATCCCTTCTTTCATGAAtatttgttaataaaatgtcaaataaaatgtt

Function

GO:

id name namespace
GO:0030187 melatonin biosynthetic process biological_process
GO:0032259 methylation biological_process
GO:0008171 O-methyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107661 lncRNA upstream 6816 12281845 ~ 12283581 (+) True G79924
TU107660 lncRNA upstream 10892 12223277 ~ 12279505 (+) False LOC103044397
TU107647 lncRNA upstream 128617 12156315 ~ 12161780 (+) True G79914
TU107636 lncRNA upstream 181293 12108809 ~ 12109104 (+) True G79903
TU107454 lncRNA upstream 214186 12073570 ~ 12076211 (+) False G79761
TU107798 lncRNA downstream 200064 12513002 ~ 12542649 (+) True G80024
TU107800 lncRNA downstream 209766 12522704 ~ 12523100 (+) True G80026
TU107805 lncRNA downstream 215688 12528626 ~ 12531849 (+) True G80028
TU107802 lncRNA downstream 216024 12528962 ~ 12531849 (+) False G80028
TU107806 lncRNA downstream 216024 12528962 ~ 12531849 (+) False G80028
XM_022672733.1 mRNA upstream 10891 12263125 ~ 12279506 (+) True LOC103044397
XM_022672734.1 mRNA upstream 15497 12263121 ~ 12274900 (+) False LOC103044397
XM_022672716.1 mRNA upstream 29160 12188758 ~ 12261237 (+) True LOC103024200
XM_022672725.1 mRNA downstream 2156 12315094 ~ 12338375 (+) True jade1
XM_022672724.1 mRNA downstream 2156 12315094 ~ 12338375 (+) False jade1
XM_007244576.3 mRNA downstream 220919 12533857 ~ 12549090 (+) True exo1
XM_007244578.3 mRNA downstream 252174 12565112 ~ 12579232 (+) True LOC103045432
XM_007244580.3 mRNA downstream 428421 12741359 ~ 12748024 (+) True LOC103046040
TU107455 other upstream 214186 12064844 ~ 12076211 (+) True G79761
TU107406 other upstream 385012 11901095 ~ 11905385 (+) True G79717
TU107323 other upstream 735258 11554682 ~ 11555139 (+) True G79654
TU107028 other upstream 1476927 10807371 ~ 10813470 (+) False fam98a
XR_002650310.1 other upstream 2735869 9495449 ~ 9554528 (+) False spata17
TU108374 other downstream 1612931 13925869 ~ 13952198 (+) True LOC103026193
TU108641 other downstream 2412989 14725927 ~ 14728799 (+) True G80648
TU108651 other downstream 2475664 14788602 ~ 14801837 (+) False LOC111193140
TU108802 other downstream 2862057 15174995 ~ 15181398 (+) True LOC111193203
TU108900 other downstream 3251049 15563987 ~ 15583331 (+) True G80857

Expression Profile