RNA id: XM_022672746.1


Basic Information

Item Value
RNA id XM_022672746.1
length 3829
RNA type mRNA
GC content 0.47
exon number 5
gene id LOC103026792
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 13484566 ~ 13719618 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TACCCGTGCACAGCCTGTGAATGCAATCTGTCAACCAATCGCAGCGCAGGAGGAGCGCTACTACTGACCAATCCTCGCTCAGGAGGGCGGGACATTTGCGAAGACGGGCGGGAAAAAAACATTCCGCCGGTTCTGCAATTAGTGGCGCTTCTGTAGCGCTGTTTAGTGGATCTGTCGAACCGGTCTGGACTGAGTCAATGACTGAGCGGGTTCTGCtgcttcgtgtgtgtgtgtgtgtgtgtgagtgtgtgagcgtgtgaggGGGGACTCTCCATCTCCCGTGAACTCCTTTTCTCCGTCTAAATTCGTCAAAGGCTCTATTTCCAGGACAGCATGCACCCTTCTTCATTCCTGTCATTGTGGCTCGAGGCTGATCTGAATTCAGCGGTCAGAAGGTGACCACCTCAGTACTTCAGCCCTTCGGCTCTGCACGaatatGCCTGGATTGCATGATGGACTCCAACAGTGCAGAGCCTGGCCAATATGTGCCCTCCAGCACCCTGGGACCACCACTTTACCACCCACAGTCCTCTCCATGGCCACTGCTTCAGAGCACGGATGACTCCAACACCTCTTTCCTGCAGGGTGCTCTGAACCTCAGTGCTGTTTACGGAATCAACGGAAGCGATCCCAAAATCGAAAGCCGCACGTATGACCCTTTGGGCGGTCACTCGCTATGGCAGGTCATCCTCATCGTCCTCTTCACTGGACTGCTCTCGCTTATCACCATCATTGGCAACATTCTGGTCATGGTGTCTTTTAAGGTCAACCGGCAGCTCAAAACTGTCAATAACTACTTCCTGCTCAGTCTGGCCTTCGCCGACCTCATCATCGGGGTCATATCCATGAACCTGTACACAGCCTATATAGTGATGGGGCAGTGGGCCATGGGCAACTGGGCGTGTGATCTCTGGCTAGCTATAGACTATGTGGCCAGTAATGCGTCCGTCATGAACTTGCTGGTGATCAGCTTCGATCGGTACTTTTCCATCACACGGCCGCTGACGTACCGTGCCAAACGCACCACCAAGCGGGCGGGGGCGATGATCGGACTGGCTTGGCTCGTGTCGCTGATCCTCTGGGCGCCGGCAATCTTGTTTTGGCAGTACTTTGTCGGGGAGAGGACGGTTCCGCCCGATAAGTGCTATATCCAATCTTCAGAGCCGATTATTACCTTCTGTACAGCAATGGCAGCCTTTTACCTGCCTGTAACTATTATGAGTGTGCTGTACTGGAGGATTTATAAAGAGACTGAGAATCGTTCCCGAGAGCTGGCAGGTCTTCAAGGCTCAGGAGGACGACTAGGAGTTCCAGAGAGACCGCATTTCCACCTTCATGCCACGAGAGGAAGCTCTAGGAGCTGCAGCAGTTTCGAGCTGGGACGTTCCGCCCAGAGACGCAGTTCCTTGCTCACTGGCCGCTTCCGCTGTTGGAAGTGGAGGCCTGGTGGAGCAGGGGCGGTTGGAACCCACAGCAAGGGAGAGGACCAGAGCAGCTGTGACAGCTGGAACAACAACGATGCGGGACTTTCCGCCGATCATTCTGGCTCCTCCGACGAGGAAGAAAATGCACCGTCAGCTCCCCGTGCCATCTTCTCAATCGTCCTCAACTTGCCTGGCATGAGAGCCGCCGTGACTTCCCAGGTCACCTCCTGCGAAGACTTGGACGCCGCTTCTGAGGAAGACCCGCTTCGAGGAAGCAGAGAGGATGACAAGAGCGATAGTCTTTCCCGCTCGGTCAGCAACGGCAACAAGCGCTTCGCCACCAACATCGCCAAAGTGCAGTCCATGCCTGCCATCGAGGCTTCAACCACTAGCATAGACCCAGCCGCCGCCACCGCCATGAAATCCCCGTCCGCGCCTATAACTTTCAAAGAGGCGGCACTCGCAAAGCGCTTCGCTGCTCGGGCGCGGACGCAGATCACCAAAAGGAAGCGCATGTCGCTGATTAAAGAGAAGAAAGCTGCCCAGACGCTTAGCGCCATCCTCTTCGCTTTCATCATCACATGGACGCCTTACAACATCATGGTGCTTGTGAACACTTTCTGCAATGGCTGCATTCCAGAGTCCCTGTGGGCCCTTGGGTACTGGCTGTGCTATGTGAACAGCACCGTCAACCCAATGTGTTACGCACTGTGCAACAAGACCTTCCGGCGCACATTCAAGATGATCCTGCTTTGCCGCTGGAATGAGCAAAAGAGCAAGCAAAGCTTTCTCCAGAGACAGTCAGTTCGCTTCCACAGGAGCATACCAAGAGACTCCACATAGCACATCCGTGGTTCAAGTATGACCTGTACGACCAACCTGTGGGTTTAGTCAGTAAGTGGAATCCCACAGAGGCGGTTTAGAGACTCCGCAAGGTTCAAGTTTACTTTGGCGCAAAGGTTGATCAGTGTCTGCAGTTTCAGAACAAACGGTTTGGGTTTTTGAACCAGTGTTCTACCTTCAGGTTGTTTCTTAGTCGTGTGTGAAATGtataaaggaataaaggaaaAGGGCTTTGGGCTTTAACTTTGGACTTTGCCTTGAACAAGTGCAATTGTCGTGCAAAAGTTCCCTCCCGCAGAAGACAAGGACAAGTACCTCCGTTGGGTGAACGCCTTGGATGAACTTGTGGTTTGAAAGCAGCTGCTcagtatctttttattttaatcgtCTAAGAAATACTATGAGAAATCTGAACAGTTTCAAATAGAAGAAAACTCAAGAAAACGGAATCTATGAATCTCTTTCACTGAACAAAATGTAAATTTCAGGGTTTGGAAATTTTCATTGGACTTTATTCTTGAAAATAAACATAACACGAACATTAATTGAATCCTAATTCTGATGCAGAGTTAAAACGATTTACGGTGTAAATGGTGTAAACAACTACAGTTGAAGTGATTTATTCGTAACTAAactttggctgtttttttttttttttttttttttttctgtgaacgTGTTGCAACAAAGGTCTTACATGTCTGTAAGATGTGGGTATATGAATGTCCTTCTGTATAAtgtaaacagaaacacaagTTGAACAGATCCTACCCTTTGCTGTTGGGTGGGTGAAGGACTTTTTGACTATTTCTCCCTCTGAACTCTGCTCTGGTAGGCCATGAGTGCTGTTTACATGATTTTGTTACAAGTGCTACAAGTATTTCAATAGCTGTTCTTGCGGTATTGAGTGCGTATTGGCGATTCCGTTGTTTGTACTTTATGGGGCTACCTTGTGCTTGCTTGAACACTGAACACAAGGGGCCTATTGGGGAAATGTTTTGTAATATTATCTCTAGCAGTGTGTGATGATGACGTATTTAAAAAGATGTTGATAATGCAGATATGTTGGTGTTGTGGGTCCAGATTTGGTTTGGTTCGCTTTGTTGTGGATCTCTTTGCTCAGCGCTTTTCTTGGCCCTTTATctcttaaagctttttttttattattattattttgcttaatttttttctttagcaaaaattacacttcattttgcatttttagTATTTGGAATATTCGTTTTGATGTATTTTAGCAGTTAAACAAGATCAAACCTATTGGTTGTATTCAGATTCAGCCCAGAAAGAAAAATAACGTCTTCTTCTCTGGCAGTGTAATATAAATGGAGCAGCAGCGCCCTCTGCTGGACACAACGTGAACTTACACATCAGatttaaaatactataaatacattttacagagCCAGACTCCAGAACACAGATTTAACATATTTCTAAACTCCTAAAATAAGTGGATAGTTAAACAGcctacagctcttgaaaaaaataagagatcacttcagtttctgaatcagtttctctgattttgctatttataggta

Function

GO: NA

KEGG:

id description
K04131 CHRM3; muscarinic acetylcholine receptor M3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108199 lncRNA upstream 117475 13366572 ~ 13367091 (+) True G80319
TU108080 lncRNA upstream 211507 13272806 ~ 13273059 (+) True G80227
TU108046 lncRNA upstream 337427 13146257 ~ 13147139 (+) True G80205
TU108043 lncRNA upstream 341073 13143085 ~ 13143493 (+) True G80202
TU108035 lncRNA upstream 359972 13122362 ~ 13124594 (+) True G80197
TU108274 lncRNA downstream 14407 13734025 ~ 13737100 (+) True G80388
TU108277 lncRNA downstream 14407 13734025 ~ 13737100 (+) False G80388
TU108285 lncRNA downstream 79238 13798856 ~ 13807021 (+) False LOC103027475
TU108419 lncRNA downstream 325761 14045379 ~ 14046945 (+) True G80494
TU108426 lncRNA downstream 337803 14057421 ~ 14063596 (+) True G80500
XM_022672475.1 mRNA upstream 86922 13274588 ~ 13397644 (+) True LOC103027186
XM_007244596.3 mRNA upstream 215734 13237205 ~ 13268832 (+) True LOC103024106
XM_022672745.1 mRNA upstream 250863 13207448 ~ 13233703 (+) True LOC103026899
XM_022672744.1 mRNA upstream 250863 13207449 ~ 13233703 (+) False LOC103026899
XM_007244593.2 mRNA upstream 320975 13151249 ~ 13163591 (+) True ecd
XM_022672748.1 mRNA downstream 2283 13721901 ~ 13807027 (+) True LOC103027475
XM_007244602.3 mRNA downstream 206260 13925878 ~ 13947320 (+) False LOC103026193
XM_007244601.3 mRNA downstream 370838 14090456 ~ 14102426 (+) True zmpste24
XM_007244600.3 mRNA downstream 388001 14107619 ~ 14110827 (+) True LOC103025466
XM_007244599.3 mRNA downstream 394448 14114066 ~ 14117650 (+) True rpl13a
TU107455 other upstream 1408355 12064844 ~ 12076211 (+) True G79761
TU107406 other upstream 1579181 11901095 ~ 11905385 (+) True G79717
TU107323 other upstream 1929427 11554682 ~ 11555139 (+) True G79654
TU107028 other upstream 2671096 10807371 ~ 10813470 (+) False fam98a
XR_002650310.1 other upstream 3930038 9495449 ~ 9554528 (+) False spata17
TU108374 other downstream 206251 13925869 ~ 13952198 (+) True LOC103026193
TU108641 other downstream 1006309 14725927 ~ 14728799 (+) True G80648
TU108651 other downstream 1068984 14788602 ~ 14801837 (+) False LOC111193140
TU108802 other downstream 1455377 15174995 ~ 15181398 (+) True LOC111193203
TU108900 other downstream 1844369 15563987 ~ 15583331 (+) True G80857

Expression Profile