RNA id: XM_022672790.1


Basic Information

Item Value
RNA id XM_022672790.1
length 3184
RNA type mRNA
GC content 0.49
exon number 22
gene id pla2g4f
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 15864483 ~ 15891088 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gacCTATAAAAACAACCAGACACTGGATCTTCAGGTTCTGCACAAATAGactcacattctcacacaccccacacacacgtCGGAACAGCTCAGGACTTCTCTGTCTGGAACGGATTTGGGAGGAACCGTAAACACGGTTAAAAATGAAGACAGAATTGGTCCCCCACTGGTATCTCTCTGTCAAAGTGCTGCGAGGGCAATTCCACCATTCCCATGATTACATGTCAGAGTCTGACCTCTATGTCACTCTGCACCTGCCCACAGCCTCCACCCGTACACTTCGCACCAAATGTGTTCCTAACAGTAACACGCCCGAGTGGAACGATAATTTTCACTTTCGCGTGCCAAGCCAGGTGAAGAATATTCTGGAGCTAAACATTTATGACCAAGACATACTGAAAGATGACCTCTGCACCAGTATCCTGTTTGACATCAGCAATCTCACCCTGGGAGAGAAGGAGACCAAAGTCTTCATCACTGATGACAAGGGCAAGCAGGATGTGCTGAAGAGTGAAAAGACTAAAGACGAGCTGTGGGTGGAGTTTGAGGTTACTGAGAGtcCCGAAGAACCTGGACAGTACATCACCAATGGAGTTTTAGTGGCAGCCCCATTGACTGCTTTGGATGTGAAAATAGACAAGCTGCCACTAACTAAAGTTGGCCAGGACCTGGTGTTAAAGCTAAGAGGGGCATATAAAGAAGACCAGGTCATCTCACTTCCAAAAAATGCTGAGTTCCTGCAGATGATCCGTTATTACATCAACAGAGAGCTGGAGACTGAGATTGGACTCAGAACACACTGTTTAGAGTCTGCGAAGGACTGCGATAAGAAAGTTTCTGCACATGCGTCCACCACAGTCACCCCGTTTACAACCAAAAATGAGATCATTGTCTCTCTTCCCGTGGCAGAGGATAAAGCAGAACTGAGTCTGAAGGCAACAGACAGGTCTGAGAAGGATCTCAGTGTCCGGCTGGATTTTGATATTCCTGAAGCAGAGAAAGCGTTTCTAAAGAAGAGGAAAGTGGTGGCGTCTAGTGCTTTGCAGAAAGCTCTGAACCTCAGCGCAGCTCCTGATCCCAgcaaggtgccGACGGTAGCAGTGGTGTTGTCTGGTGGTGGTACTCGAGCGATGACCGCCTCCTTGGGCTCTCTGAGAGGTCTGCAAAAACTTGGCCTACTGGACACGGTCAGCTACATCACTGCAGTGTCTGGCTCCACCTGggCATTGTCGTCTCTGTACAGTGACCCACACTGGTCAGCCAAGGGGATGGACGAGGCTTTGCTGCCATTACAGAAGGAGCTCAGTAAGAACATGTACACTCTGTTTTCTCCGAGTCTGCTGCAGTATTACAAGAAAGAGctggagcagagagagaaaggggggcaCCCCGTCACTCTCATAGACATGTGGGGACTCGCCCTGGAACAGCTCATCTTCGGCAAGAAATACGCAGGTACACTTTCTGACCAGCAGAGGACAGTCTCAGAGGGTCAGAACCCGCTCCCCATTTACACAGCGGTCAACATGAAGGAGGATGCCACTGGCTCCATGGTGGCTGAGTGGTGTGAGTTCACGCCGTTTGAGGTGGGATTTCACAAATATGGAGCCTTCGTCCCTACAGAGAACTATGGGAGCGAGTACTACCTGGGTCACCTGATCCAAAAACTCCCAGAGACGCGCATCTCTTATCTACTGGgtaCATGGAGCAGTATTTTCTCTCTGAATCTGACTCAGTTGTGGAGCACAATTACGGGAGTGATGCCCACCTGGACTCCTTGGATTAGGGAGACTGTGAGCAGCATTGAGACAGACCAAAAACCTTCAACACTGGACACTCTGAGAGTCATTCCTGAGGCAGTGTTTCTGAGCAGCTTCATGAACAGCCGACCCGTCATCAGCAAAGCCTTCAACTTCATGAGAGGATTCTTCCTAAGCAACAGCTACAGCGAGAACTCTGCATTCACTGCGTGGAAGGACACCCATCCCGATGCCTTTCCAAACAGTCTGACCCCGGGAGACCCCAGGCTGGGTCTGGTGGACTCTGGATTTGATATTAATTCTGGCTTTGCTCCGGTGCTGCGCTCACACAGACACGTGAACATCATTCTGTCCCTCAACTACTCCTGGGGGGCCGACCAGTTCAGGGTTCTGAAGCAGACGCAGCAGTACTGTGCTGACCGCCACCTGGCGTTTCCCCGGATAGACTTCAATAAGGTGGCGTCGGAGCCTGAGAGGGAGGTGTACGTGTTTGAAGATGAAGACAATCCTGAAGCTCCCATCATTATTCACTTCCCGCTGAGAAATGTGTCCTTCAAGCAGTACAAAGCTCCTGgtgtgaaaAGGCAGGGTGAAAAGGAGCTAAAGGAAGGAGATGTTAATGTTACCACTAGCTCCTCTCCATATACCACCCAAAACTTGACCTACGCTCCGAAAGACTTCCAGAGACTGATCGACCTCACCTCCTACAACATCGTCAACAACAGAGACACCATCACACGGGTTCTGCAGAGAGTCCTGCACAGGACAGCACCTGAGGTGCAGCCGACCATCCCTACCCTCTCGGCCAGCCCAATCAACCCCACCAACCAAAACAACCCAACCACTCCAAACAACCAATCCGGTCCAACCAACCCAACCAACCCAGCCACCCCGGCCAGCTCAGTCTGGTCCCGGGTAGTAGCTGGCGCCAAGTccctgttttaaaatgacaaataacTGTACAACAAAGGCTTATAATACtagaatatatagaatatatatcttttacattacatttacaagtTCCTTAAAATTGAATCTGAAGCCTAGCCTCTGTCACCTTGTTattctccccaggtgttccttgtctgttACAGTGTGAATATAGAGCCgctctgtttcagtgtttctttgtcTGGTATGGATTGTACTGTGTCACTAGTGATGGCAAAAAGTGATGCTTTTGGGAGATTGAATCAGATGAACCAATAGATTGATTCAGAAAAAGATTTGATTTGTAAGACGTTTAAATCATCATTCACCACACCACAGTGACATCTAGTGGGAAATTAGCCTTTTTACCTGTTTGTTTTCAAGCTCAATATGATCCCAAACCGCAGATCCAGGTCTTTTCCCAGATCCTTCCATTTTACAAATGCTAATGGTTTGAcaaataataagcaataaatGATAAAGCAATGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108938 lncRNA upstream 135221 15726640 ~ 15729262 (+) True LOC111193205
XR_002650337.1 lncRNA upstream 135491 15726594 ~ 15728992 (+) False LOC111193205
TU108936 lncRNA upstream 143474 15719571 ~ 15721009 (+) True G80887
TU108929 lncRNA upstream 153320 15709585 ~ 15711163 (+) True G80881
TU108912 lncRNA upstream 199529 15664746 ~ 15664954 (+) True G80869
TU109001 lncRNA downstream 70419 15961507 ~ 15963105 (+) True G80942
XR_002650338.1 lncRNA downstream 132737 16023825 ~ 16032864 (+) True LOC111193206
TU109073 lncRNA downstream 190230 16081318 ~ 16086958 (+) True G80998
TU109074 lncRNA downstream 190230 16081318 ~ 16086958 (+) False G80998
TU109095 lncRNA downstream 273392 16164480 ~ 16170976 (+) True G81011
XM_022672784.1 mRNA upstream 160365 15682373 ~ 15704118 (+) False eno4
XM_007244644.3 mRNA upstream 160365 15682374 ~ 15704118 (+) True eno4
XM_007244645.3 mRNA upstream 160365 15682374 ~ 15704118 (+) False eno4
XM_022672782.1 mRNA upstream 322197 15507380 ~ 15542286 (+) True LOC111193204
XM_022672773.1 mRNA upstream 712002 15024469 ~ 15152481 (+) True wdpcp
XM_007244649.2 mRNA downstream 6436 15897524 ~ 15920726 (+) True kcnk18
XM_007244652.3 mRNA downstream 48315 15939403 ~ 15947994 (+) True LOC103040417
XM_022672478.1 mRNA downstream 535437 16426525 ~ 16440795 (+) True LOC111193130
XM_015604620.2 mRNA downstream 572813 16463901 ~ 16467758 (+) True dnal1
XM_007244667.3 mRNA downstream 573024 16464112 ~ 16467758 (+) False dnal1
TU108900 other upstream 281152 15563987 ~ 15583331 (+) True G80857
TU108802 other upstream 683085 15174995 ~ 15181398 (+) True LOC111193203
TU108651 other upstream 1062646 14788602 ~ 14801837 (+) False LOC111193140
TU108641 other upstream 1135684 14725927 ~ 14728799 (+) True G80648
TU108374 other upstream 1912285 13925869 ~ 13952198 (+) True LOC103026193
TU109871 other downstream 2569042 18460130 ~ 18464096 (+) False LOC103035760
TU109872 other downstream 2569042 18460130 ~ 18464096 (+) False LOC103035760
TU109873 other downstream 2569042 18460130 ~ 18464096 (+) False LOC103035760
TU109874 other downstream 2569042 18460130 ~ 18464096 (+) False LOC103035760
TU109875 other downstream 2569042 18460130 ~ 18464096 (+) False LOC103035760

Expression Profile