RNA id: XM_022672852.1


Basic Information

Item Value
RNA id XM_022672852.1
length 9067
RNA type mRNA
GC content 0.50
exon number 28
gene id LOC103046791
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 18349742 ~ 18411822 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agtgagagggagCCATAATGACTGTTACTACTCCCAGTGTAAATCAGAGCGATTTCCCCACCTTCGCACCAGGACCCGGGCAGGGAATTTAACACCCCTCAGCTTTTTTAACACACATAACAAGTGTTTCTGTGCTGTTTCCGGATTATtagtctgtatttatttttaattaatacttaatattaAGATAAATATGATTATACGGTAGAACGCGCTCCTCTGGAAGTTTCTTATCCCgcggctctctctctctcctgtcgcACTTTCCGCGCGGGGCTATATGGCGCTGGAAGCGCGTCCGGAGCTCGCGGGCCGGCGCTTCGTGTGCGCGAGCGGCGCGGGGACGCTGGAGCTCGGCGAGATCTCGCGCTGGAACTGGAGAGCCGGGGTCATCCGCGGCGTGAGCACGCGCGACACGGAGAGCCCGAGGCTAGCGgtgtgtgtgGAATGGGATGGTGAGGCGGGAGCTGAGCGTCACTGGAGGAGGCTGAAAGAGGAATGGGAGGTGTTTGTGGTGGAGCAGGAGCTGGTTTGGGCCAAGAGGAAAAACAGCACCTCGCAGGAGAACAGCTCTCTGCAACCTGCACTGGTTTTCCTGCCATTGATTGGCCAGGACAGAGTGGGTGAGATGTCAGTGGTGGAGTTTGTGTCTGATCGACAACTGGAGTTCTACACAGAGCAAGAAGAGCTGCGTCCATTTGAGCAGAGTGAAGTGGACAACTCAGCCCTCAAAGAAGATACTTCGTGCCGGGAGCAGGTCCAAGCCTGGCTCAGACAGAGGCAGCTCCAGCACATTCTTCAGCTAGGGCACGGCTGTGTGAAAGGCCTTAGGGTAAAAGTGTTCAGACATGACTCCAAACCCCAGTGGCTCTATGGTACCGTCAGTCACCATGATCACAACAGCGGAACCATGACTATTTTGAGCGACCAGGTATCAGAGCCTCCTCTGAGTGTAGACCCAGCACTTACACAGGTGGTTTTCCTGGACGATATCAGGCAGTCATTATTGCTGGGAGAAAACTCCACTACTAAATGCAAACCTCACGTCAGGATCAACAGGACTACGTTGaaCACAATAAACAGGTCAAACAACACTACACTGACTGACCAGGCGTGTAGCTCCAGGCCAGTGCAGAGGAAACAACCTCAACTGTGCCGACAGAACTCCAACTGCAGTCTGGCCGAGGACGAAGCGGAGGAGATGAGGGAGAATAAGAGAGCTGATGAAGTGAGAGCAGATTCCTCCAAAAATAGGATAAACCAtgtggagaggaagaggaggaaaatgggggaggaggaagagcagaatgaaaaggagaagagaagagttgGCCTAAAGAGGATTAAAGCCGGCAGTGGCTCTGACCTGTCTGATGGCAGTGATTCGGAGGATAGCAGCTGCAGACTGCAGGAAATGTCCTGTGTTGTGGGGTCAAACAACTTACCTAGAAACTGCTGCATTTCAAACAGGCCAGCTGACCACGAGACAGCTCATAGTCTTCCTGTGGGGCGTACGGTGCGGGACTTGATAACTCGCTCCTCCCCTAAAGGCAAGGAGCATTCTCCCAGCCACATTTCGGAGCTTGATGGGCAGCGGGTGGGGGAAAGCCCTCACTCTGAAGTCCGTTTACCCAGCCCATCATGCAATGGAACATTTCAAAGCACTGGAGTTCCAGACCCACAGTGCACTGAGGGACCAGGGTGTGATAaaacagaggaggagagaggtGCTGGAGAGGTACTAGAGGACAGGAGTGAAGGAGCGTCCCAGGAGGACTCAGAGGCTGTGTCTGCCTTACTGGCATCCCAAGAGAGTGAGCAGCTGGTTTCTATGGAGACGGCGTGTGTGTTGCTGCACACATCATCACCAGAGTGTGAAGCAGTGGAGGGTGACCAGGAGAATCCACAGAATGATCCAGAGGTCAGAGGATCAGCTCTAAACCACCCGGAAGCCGCCACCTCTAGAAGTGAATCAGCAGCCTCATTAGAGGAAGAGTCTAGGGGAGCTCTGACTCAGTCTCCCATCATGCCATGCAATGCGGAGGTAGAAGCTGGGAAGGTAGCTAAACTGAGTCAGTCTCCGGGAGCTAGTAGTGGTCCTGAGCTCAAAACTGCACTTGTTTCAGAAATGACCCACAAACCCACTGTGCTCCCCAGTCCTTGCTCCTCTCCAGAGATCATCTCCAAACCACCTGTAGTGACAGAAGCATCCAGATTAAGGCTAAATGAATCTCCTGAGGTTAGCAGAATCAAAGAGAGCAGTTCTCCTATTAAAGTTACTACAGCAAAAGCTCTCATTGGCCTTAAAAGTACACCTGGTCCCAAAGTAACCTGCTCCACAATCCTGAATCGTAGCCATGCATCTCCCCCTCTTCCAACTGACCAACCAGCCCGGTCCAGAACTCCTCCACAGAATCTTTCTGCTGTTCTAGATAAACCAACTAAGAGCCCATTGATCATCGACAAGAACGAGCCCTTCACTGTCTACAGAGACCCAGCACTCGTGAGGAAAGAGCTAGAGAACCACCCAACTTACATCCAACCTGCACACACACCACCAACCCCCCACTCCAACCTCACCTCAACATCTTCCCATGCCAAGATTCTCAGCCCCACTCCCCACCTCTCCCTTCCTTCCCAGACTCCTCTTTGCTCTCCACACCCCTCCATCCCTCATCCCCACTTGTTACCCTCCCTGCTGCCTGGCCTGCCCCCCTCAACAGCTCTCCTGGCTGGTCACACTCGGCTGGGGCCTCTAGGTCTCCCCCATCACCCACTATCTTTGCAGCCCACACCCTCTCTCTTAGCCCAAAGCGCAGGAACCAGCCACCTGGCACCACTGGGCTTGTACCCACTTCTCTGGCCACCGTTCCCCAATGGAGCCCACAACTATGGTCTGGGCCTCCAGGGCTCTAAATGGGCACCACCAGAGAATGCTGGAATGTATGAGGCTAACTTGAGAAGGAACACACCAAGCCCCTGGCTTCCTCAGCCCACTCCTGTAGCCAGTGCAGAAGGTCAGGGGTTAAGAACACCACTGCCTGTGCGCCCATCGAGTGCTGACCCGCATAGAGTGTCCAGAGCTGTCCAGCCCAGCACCCCCACCTCAAAAACCACAGAGGAGCTTGAGAGGAGGGCTTTCACAGAGACCCAACGCATGATTCACACACCTATAAAGATAGAACAAGAAAGAGTTAGGGCCACAGTGGAGAGGAATGGGCACAACTACCGCCCAGTTGCCCCGGAGTCGCCTTCTAATTGCCCAAAACAGCCTCAGGTGGTCTACGACCTCACAGGCGATCGAACCAGCCACTACCAAGAGGAGAGCCGGCGCATTTTACAGGAGAGCATTGAAGTGGCGCCGTTTACAGCCAAACTGGGTTCAGACAGAGAAGCAAAGTATTCCAAGAGTCCTGTGATTCATTCCaaacagagagagggggagcGTGAAAGAGACAaggagcaagaaagagagatgcATGTGTTCAGACACAGTCTGCCACCCAGACCACAATCAGCCCACCcttcccccacacacacccagacCAACTACTACACCCCTGTGACTGGAGGTGTGGAGAACAAGTCTTCAGCACGCAGGGCCCCACCCAGCAAAGAGCTGTATGAGAGGCTGAGTGGCCCCAACACTGCTCCCTCTGTCCTCCATTCAGCCAGCACACAGAGCACAGTCAAGGCCAGGCCCCCACCCCTTGTAAAGCGCCGCCCTGAGAAAGAGGAAGGGCTCCTGGGCAAGATCGCAGAACAGTTGGCCTGTAAAGCCAAATCAATGATCTCAGTGGAGCCAGTGGAACACTGCTGTATAGAGAGAAAGGGCTCCTCCACTTCTCTCATCTCCATCTCTAACTCTTCTTCTCGTGCTGTACACTCTCTGCACAGGGCACCCATCTTCCACCCTCCTGCTCCACCCGTTGTGGCCTCTAAAGAGGCAGGACAAGGTAGATTGTCTCCACCCACACTGACACCTATCCAGCCAATGAGCTTATCTGGAAAAGCTCAGAATCAACAGAGACCACCCACACTAATGCCAGAACTTAGACATGGAGCAGTTGCCGGTAAAAGGATGGCCCCTGAGCCGATAAATGTTACGAGCCAAACATATGATTTACAGAGAGGTGGAGTTTTGCACAACCGAGAGAGAGTGGTGGGAGGTCAAACGACAAATGGAGGAATGATTACTCCACAGTCTGCCACAGCTTCTGTTATTGTTCGACCATCCAGCTATGTGCATGCACCCATGAACTACTCTGTCAGTGAAAGGTCGCTTCCCCAAGCTCACTGTGAACATGTGCGGACATTTGAAAGTGTGCCAAATACACACTTAAAGGAAAGTAGTAGTGTGCAATGTAAGAGGGGTGTCCTGTGGACCCCTGTGGACACTGTTCACCCAGTCAACATGGTCACTTCAAAGCAGGATGTTAATGTACCCTTAAATATGACAACTAAAAATATGAATTCCACTTATTTTAACAGTCGTGGAGTAAAATATTCAGCAAATATAGAAACACCTTACTCACGAACAGATGTAGTAACTGAACATTGTAAAAAGGAGGCCATGGTAGTTCAGCCAAATCTGGATGTCTCATCCGTCTCCTGTTGCCCTACTAGAGACATACCCCATGTGAAGAAACGTCGAGCTGGACTAGCTGCCCCAGAACCAAGACATAACACATATACAGTTCAGCCCcttcacactacacaaacatTGAATGTTAACAAGAATGTTTTACAAATGCCACACAGTAGATATAGTACTTAcattacacacagcacacacaccatTTGTACTGCACATGCTttgaacagagagacagactcaGTATTCAATCCTAGCCCTCCAAAATGTCCCAGGTTATCCTCCGAAGTCCCTAGTGTTGGGGAAACTAGCAAGCCCTGCTCAGTGACCAAAGGTCATCCACCAGCTCTTTCGGTCCATACAAACCAGCCCGCACAGTCTGGTCAGAACAACTACCACAAGCTAAAAAAGGCCTGGCTGACCCGCCACTCTGAGCAGGACAGGGGTAGTGCCAACCCACAGGTAGCAGGAGGCAGTCAGATTGATGCTACCATCACTACCACAAGCTATAACACTCCGCCAATAAAACAGGAGGTAAATGGCCTGGAGAACAAATGGTCCAACCAAGAGAGCAAAGAATCCTGTATGGACAAGAGAAAGTCTAAGTCGCTGGAAAGAAAATGCCTACCAGAGGACAGGAAGTCCAATGGAAGTgatacaaaaactaaaactgatgACAAGAAACCTGTCATGGGCGACAAGAAAGCTACCCTAGAAGATATAAAGCCCATTTTGGACAGGAATGGTAACTTGGAGGATAAGAAACCGAGCTCTCAAAACAAGAAGGTGTGTGCTGATGAAAAGAAACCAACCCCCATCACCGTTAAGACAGAAAAGGGTAAGGGCAATTGTGGAGACAAACATGGGGATTCGGGCAATGAAAGCGAGAATCGCAAATCTGTCAATGGTGGAAAACGCCAGCCGAAATCGATACACATAAAGAAGCAGAatgagcagcagaagaagagagGAGATCATGTAAAAGAGGAGAacgaggaggatgaagaagaggaagaggggaAGTCTAATGTAAATCTCCGGACGACCAAAGAGAAATCTCTGCACCGGCTGCCCAACACCAATGGCATTCCTCGATCAGTGCTGAAGGACTGGAGGAAGGTGAAAAAGTTGAAGCAAAGTGGCGAAGCCTTCCTGCAGGATGATTCGTGCGCTGAGATTGGTGCCAATGTGCAAAAGTGTCGCGAGTGCCGGCTGGACCGCTCTCGCAAAGCCCAGGAGCCTGCCATCTCTCCAGTCTTCTGTCGCTTCTACTACTTCCGCCGACTGTCATACAGCAAGAATGGAGTGGTTCGTGTGGATGGATTCTCTGTTGCCGAGGACACGGATGAGGATGCAGTGAGGGTCTGGATGGCTGGATTTGAGATTGAAGATGAGTGGAATAAAAAGGAGATGGAGCTGAACTTGGCCAAATATATCCTCACACTCATAGGAGACAAATTCTGCCTGCTAGTCAAGACTGAGAACATCGCTGTAACCTGGGTCAAAAAAGaaacccAGGTGATGTGGAAGCGGGCAGTGCGAGGTGTGAGAGAGATGTGTGATGCGTGTGAGGCCACTTTGTTCAACATACACTGGGCCTGTCACAAGTGTGGTTTTGTAGTGTGCATGGACTGCTACAAAGCCCGCGAGAGGAAGAGTGCCAAAGATAAAGAACTGTATGCCTGGGTCAGGTGTGTAAAAAACCAGCCCCACGACCTGAAGAATCTAATGCCCACCCAAATAATCCCAGAAACAGTGCTGACAGGTTTGCAGAGTGCCATACACACCATAAGGAGAGAATATGGCATCCCCTCCCACTGCTCCTGCTCTGGGAGTTCTCTCCCAGCCTTCTCTCCCAAACCCATCACGACCAACGGCCTCTCACTGCTTTCAGAGAAAACACAGTGTGACTCGAAAAGCCAGCATAGCTCACCAAAAGCCCCTGATCAACAGAAGAGTGCACAAGACGCAGTTCACAAGACCCCCACAGAGAGGAGAgGAAAGTCAGACTGTGATGGCTTGGAGGTTCTAGGCAGGAAGTCCAGCAGTCCAGAGCAGGGATCCACCTTGCGTGACCTTCTGACCTCTACAGCTGGGAAACTGCGCCTGGGGTCTACTGGCCCTGGAATAGCCTTTGCACCTGTTTACAACAGTACTGATCAGAACACTCAGAACGCTCGTATGCCCAATCTCCTTGATGACATCATAGCCTCGGTAGTAGAGAACAAGATTCCCGCCTCCAAGATAGCCAGACTAGGGCTGAAGCAGGACTTGTTGACGGAAGAGGAGGTGGAGTTAGGACTGGAGGAGGCGAAGCCCGAACAACTCTCATTGGCTGACCCCCATGCCAGTGTCCCTCATGATTGGCTCGGCAGCCACCGGCTGCTCTGGCTTAAAGATCACCGTCACCTAGGCAACCAAAGACTGTTCAAAGAGAACTGGACACAAGAGCAGCCGGTGCTGGTCTCTGGACTGCAGAAGAGTCTGAATGCCAGTCTTTGGAAACCGGAGCACTTCAGCAAAGAGTTCTCCGCTCTCCACAGTGACATCTACAACTGCCGTGATGGAAGCATCACAAACTCCCGTGTCAAAGAATTCTGGGATGGATTTGAGGATGTATCAAAGAGGCCTAAATCTGCTAAAGGTGACCCGGCAGTATACAGGCTGAAGGATTGGCCATCTGGGGAGGAGTTCCTGGCTCTCATGCCATCCAGgtATGAAAACGTGATGAGCTTTCTGCCGGTTCCGGATTACACTGGTCCGGATGGCACTCTCAACCTGGCCTCACGCCTGCCATCATTCTTTATCCGGCCAGACCTGGGCCCTCGCCTCTGCTGTGCTCATGgtGTGACAGCATGCCCAGAGCAGGACTTTGGAACCAGCAATCTGCATGTTGAAATCTCTGACACCATGAATATTCTTGTCTATGTGGGCGTAGCCAAAGGCACAGGAGCTCTCTCTAAAACAGgagTATTGAAACTCTTAGAGAGAGAGGTTCTGGATGAAAGTGCAAAGAAGAGGCTGAAAGATCCCAATGAAACTCCAGGCGCACTGTGGCACATCTTCTTGAGTAAAGACCTCCACAAGATCCAGGAGTTCCTTCAAACGCTTTCAGCAGAGCATGGTGAAGCGGATACTGAAGCTGACTCTGAtgcagagtgtgagagtgaagcGGACCCCCTGCGAGAAGGCGGCTGGTACCTGAGCCCTAGACTACGACAAagattgctggagcagcatggCGTGGAGAGCCGCACTTTGCTCCAGTTTTATGGAGACGCCGTCATCATTCCGGCTGGGGCACTACACCAGGTTATGAATTTGCACAGTTGCATCCAAGTAAATGTGGACTTTGTCTCCCCTGAGCACGCCCACAACTCCTATTACCTGACCCAGGAGCTCCGCCCCCTCAAAGACCAAGTCAACTATGAGGACAAACTGCAGGTGAAGAACATCATCTACCACTCAGTGAAAGATGCTGTAGCTACACTGAGCAGGCACTTAAAGGAACAAGTAGATGAGTTTAAGGAGGAAGAGTCCTGACAGCacccctcctcttcctcagacCAGTCCCTAGGAGCATGAGTCTTCACATTCTTAATGGAGGAAACCAGTAGCCTGAGACCCAAAACTGGAGCTGCACACTTCACACCAATGaagcaaaaacacacttttgCTTCCATTGCAAAGACGCATCACTTCCTCCATGATGTCACTGTCTTCTCATTTGATCTGattctcttctcctcctccctgATGTCTTCCTGCTCGGACAGGAAGTGAGATTAGGAGCTGAGGCATGACTGAACCAGAGGGACAGAGGAAGTTCATCTCTCTCTTCCGAGCAAGTAGCTGCTGTAATGCTGCTGGGCAAGAAGAGTAGTGAACTGCTAAGCACAGCACTTTCAGTCTCACACGCTGTGTGTATACTAGGCTGTGGGAAAGAAACCATTGAAAAAGAACAACTGcaatgtttctttgtttttgttttgtttcgttttttttttttttcagataaagATGCTCTAAGACATACTCTTAATCAGTAGTTATCTTATCATGCTGCTAACAGTTTAGTTACTCTGTCTGCTAAGGTTCAGACAGGTGGGGGAGCAGCTAGCCCAACAACCATAGCAGCATTCCTTTATGTCAGCCAACGCCAAGCTGTTAGCTGTTATTGTTTATTTCAATGgcgatattaaattattaatagttTGGCAGGTATTCACTGTGCAGAAGGAGAATACAAAAGAATTTGCAGTATATCatgtgtttgttaaaaaaaaagatcttgtGAGATTTTCAGCTGaaatatattatgtaaatagcagaatatacatatataatatattaattatgatTTTTCTATAACATGGTGTGCTTTAATTGCTGTATGTGTTGTTTGCTACTGTATGTACATTGAAGTTAAAGAGATGTTttacattttccattaaaaatggATTGGTCAGTATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109771 lncRNA upstream 72552 18276863 ~ 18277190 (+) True G81466
TU109770 lncRNA upstream 83258 18266219 ~ 18266484 (+) True G81465
TU109762 lncRNA upstream 139401 18209785 ~ 18210341 (+) True G81460
TU109754 lncRNA upstream 212536 18136612 ~ 18137206 (+) True G81452
TU109747 lncRNA upstream 254644 18076372 ~ 18095098 (+) True G81446
TU109863 lncRNA downstream 29247 18441069 ~ 18442711 (+) True G81537
TU109865 lncRNA downstream 35566 18447388 ~ 18500711 (+) True G81539
TU109881 lncRNA downstream 58585 18470407 ~ 18471571 (+) True G81547
TU109866 lncRNA downstream 63295 18475117 ~ 18498878 (+) True G81540
TU109895 lncRNA downstream 133647 18545469 ~ 18550207 (+) True G81558
XM_007252531.3 mRNA upstream 7459 18335100 ~ 18342283 (+) True ahsa1
XM_007252537.3 mRNA upstream 34452 18308247 ~ 18315290 (+) True LOC103038992
XM_007252538.3 mRNA upstream 43648 18284577 ~ 18306094 (+) True eprs
XM_007252539.3 mRNA upstream 43654 18284577 ~ 18306088 (+) False eprs
XM_022672845.1 mRNA upstream 312668 18027307 ~ 18037074 (+) True cmpk2
XM_015605081.2 mRNA downstream 24467 18436289 ~ 18440089 (+) True LOC103032442
XM_022672481.1 mRNA downstream 48301 18460123 ~ 18469635 (+) True LOC103035760
XM_007252521.3 mRNA downstream 69857 18481679 ~ 18497039 (+) True zfyve28
XM_007252519.3 mRNA downstream 91369 18503191 ~ 18510469 (+) True LOC103034157
XM_007252520.3 mRNA downstream 92412 18504234 ~ 18510469 (+) False LOC103034157
TU108900 other upstream 2766411 15563987 ~ 15583331 (+) True G80857
TU108802 other upstream 3168344 15174995 ~ 15181398 (+) True LOC111193203
TU108651 other upstream 3547905 14788602 ~ 14801837 (+) False LOC111193140
TU108641 other upstream 3620943 14725927 ~ 14728799 (+) True G80648
TU108374 other upstream 4397544 13925869 ~ 13952198 (+) True LOC103026193
TU109871 other downstream 48308 18460130 ~ 18464096 (+) False LOC103035760
TU109872 other downstream 48308 18460130 ~ 18464096 (+) False LOC103035760
TU109873 other downstream 48308 18460130 ~ 18464096 (+) False LOC103035760
TU109874 other downstream 48308 18460130 ~ 18464096 (+) False LOC103035760
TU109875 other downstream 48308 18460130 ~ 18464096 (+) False LOC103035760

Expression Profile