RNA id: XM_022672858.1


Basic Information

Item Value
RNA id XM_022672858.1
length 3187
RNA type mRNA
GC content 0.49
exon number 16
gene id plk4
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 18568668 ~ 18579571 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atgtttgacGTGATTCAGTCCTTAATGCAAAACCTAACTAACAACGAGAGATGCGCAATAAATGGAAAAATACTTAGGACGTCCGGGGATCTTTCAATCGAGGACTTTAAGGTTCTCACCTTACTTGGTAAGGGATCCTTTGCATGTGTTTACAGAGCTAAGTCTGTGAACACGGGCTTGGAGGTGGCGATCAAAATGATTGATAAGAAAGCCATGCACAAAGCTGGCATGGTCCAACGTGTCATTAATGAGGTAGAGATTCAGTGTCGGTTAAAACATCCGTCAATACTGGAGCTGTACAATTACTTTGAGGACAGTAATTATGTGTACCTGGTGCTGGAGATGTGCCATAATGGGGAGATGAGCCGCTATCTGAAAGACAGGAAGAAACCTTTCACAGAAGAAGAAGtgAGACTCTTCATGCATCAGATTGTAAAGGGCATGCTGTATCTGCACACCCATGGAATTATGCACAGGGATCTGACCCTATCTAACCTGCTGCTCAGCAGCAGCATGAACATTAAGATAGCAGACTTTGGTCTCGCCACGCAGCTCAAACTGCCCAGCGAGAAGCACTTCACCATGTGCGGCACACCTAACTACATCTCTCCTGAGGTAGCCACACGCAGTGCCCACGGCCTGGAGTCTGATGTCTGGTCACTGGGCTGCATGTTCTACGCCTTCCTAACAGGCAGGCCTCCTTTCGATACGGACACTGTCAAACAGACCCTCAACAAAGTGGTTTTAGGAGAGTATCAGATGGCCACTCACGTGTCAGCTGAGGCTCAGGATCTGATTCGGCAGCTGTTACAGAAGGACCCTACTCTCAGACCCAGCCTCTCAGCGGTGCTGGACCACCCTTTTATGACCCAGAGTGGACCCACTGCAAGCAAAGATTCTGGCGCTAGTGAGGGAGGCTCTATAGATAGTGGCATAGCAACAATATCTACAGCTTCCAACACCACGAGCAGCAGCAACAGCCGTCTCCACAGGAAAGCCCGGCAGGTGATTGGCCAGGCCTTACCGAACCGCATGGTGCCGCTCCCCAGCCAGTCGCAGCACTCCACTAGCTCCAGTTTTAAGAGTGGGCAAGACTGGCAGCCACATCCATCAGGCAATATGAGGCTTCTTGTGGATGCAGACCGTGAAAGGCCCCATTCTCGATACCTGAGACGTGCCCACTCCTCTGATCGGTCAGGTGCTGGATTTAGCCATGCTAGGCAGGAGGTGGAGTTGGAGCGATGCCACTCAGAGGAGGTGATTCCAGGCTCCAATCGGATCTTCCCATCAGCTTCAAGCTACCGGGAAACTCCTCATGGCTATTCTGAACATGGGCGGCTTCCTTCCCCCCCGGTCAAACAGCCTGCAAACCCTGGGTCCTCCTTCTCTACTCCAGCACATCCAGTCAGACTGCAGATGGCTGAATCAGAGACACAGCCATGGTTCAGTACAGATGGGTCTTTTAAGAGGCCAGCAGATGTCAGCGGCCACAGCAGCAGTGGAAGTTTTCATTCTGGGCGGGAAGCATTGGAGGCTGTACCTTCCTGCAGTGACAGACCAATGCTGAGAGGAACCAGTGGTCTTCCTCCAAACTCATACAGCCATTCATCCTTGCAGAACAATCCAAGACCCTGCAGGGGGGGTGGACTGGGAGGGGGGCAATTGCCTGCATCTAAGGACTGTCTAGATGTACAGGGTGCACCTCTTTCCAAGAGCAAAGCTAATGTGGTAAAGGAGAAGAAGAGTCCATTTCCTCCTCTGTGTGCAGCCAGACTGAAGCCTATCAGACAAAAGACCAAAAATGCTGTGGTCAGCATCCTAGACACAGGAGAAGTGTGTATGGAGCTTTTGAAAGGCCAGGGAACCCAGGAGAGGGTCAAAGAAGTGCTCAGGATATCCTGCGATGGATCCATGgtcacTGTGTACCAGCCCAACGATGGTAAAGGGTTCCCTGTCTTGGACCATCCACCTTCTCCCCCAGAAGATATTTTTATATGCAGTTATGAGGATTTGCCAGAGAAATACTGGAAGAAGTATCAGTATGCTACTAAGTTTGTTCAGTTGGTGAAGTCAAAGACTCCTAAAGTAACCTTGTACACCAAGTTTGCCAAATGCATGTTGATGGAGAACTCCCCTAATGCAGACCTGGAAGTGTGCTTTTAtgatgGTGCCAAAACCCACAGGTCGGGTGATCAGGTACGAGTGGTGGAGAAAAGTGGAAAGTCATACACGATGAAAGGGGATATTGGCCTGAGTGGTGTCAGTCCTGAGTGCAGACTCTACATGGAGCTTGCAGATGAGgGTCACAGAATGTGTCTCTCTTTGGAGGCTGCAATAAGTGCTGAGGAGCAGCGTAGTGCCAGAGCTACACCTTTCTTCCCCATCACTATTGGCAGGAGGCCAACTAACCCTACCTCCTCATTCCCTGCAACACAGCCTGCTTCTGATCAGAGTCCTGCAATGCCTGCTGAGGTGGCTCAGGTGTGCCTGAGTCCGCCCCAGGCACCCCATATCACCCCTTCTATGATTTCCTACAATGGGTCTGATTTCACAACAGCCAGTCTGGCCAAAGGCAGCTCACCCCAGTCAGCCAAAGATGGGCATAATGTCAATACTGGAAAAGTACTTAAGTCCATCTTTGTACCCAACATTGGTTGGGCCTCACAGCTAACAACTGGAGAAGTGTGGGTTCAGTTTAATGATGGATCCCAGCTAGTGGTCCAAGCAGGGGTCTCCTGTATCACGTTCACCTCCCCAGAAGGACACATCACAAGGTATAAGGAGAATGAGAAGCTACCAGAGCTGGTAAAGGAGAAACTGCATTGCCTGTCCTCCATCCTAAGCCTCCTGGCCAGTCCAGCTGTACGACGCTGAGCAGCAGAAATAGCTTGGAGAAAAGGACCATAGTGAAAAGCacttctttatttcagtaaaaaaaaatctctttcaaaaaaatgcattaagtatctgtaaatacattttaaaacgtTGTACAGATTGTTCCAAGATtatgaaaattatatatttttatgttgtacAGTATGGATTTTTTTGTAGTGGTTGTTATGAGCATTTggattgtgtaaaaaaaatatttttttactcagcaAAAAGGTTACTCCAGAGCTGCAGTGAAATGTCATGGGCAAAAATGCAAGTAATAAACATCGTCTGCTGGCTAAACCTC

Function

GO:

id name namespace
GO:0098535 de novo centriole assembly involved in multi-ciliated epithelial cell differentiation biological_process
GO:0046601 positive regulation of centriole replication biological_process
GO:0006468 protein phosphorylation biological_process
GO:0098536 deuterosome cellular_component
GO:0005814 centriole cellular_component
GO:0005730 nucleolus cellular_component
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function

KEGG:

id description
K08863 PLK4; polo-like kinase 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109895 lncRNA upstream 19323 18545469 ~ 18550207 (+) True G81558
TU109865 lncRNA upstream 68819 18447388 ~ 18500711 (+) True G81539
TU109866 lncRNA upstream 70652 18475117 ~ 18498878 (+) True G81540
TU109881 lncRNA upstream 97959 18470407 ~ 18471571 (+) True G81547
TU109863 lncRNA upstream 126819 18441069 ~ 18442711 (+) True G81537
TU109957 lncRNA downstream 125244 18704815 ~ 18706282 (+) True G81600
TU109962 lncRNA downstream 134634 18714205 ~ 18717199 (+) True G81602
TU109963 lncRNA downstream 134634 18714205 ~ 18715897 (+) False G81602
TU110103 lncRNA downstream 286105 18865676 ~ 18865988 (+) True G81701
TU110111 lncRNA downstream 351585 18931156 ~ 18937144 (+) True G81705
XM_007252514.3 mRNA upstream 1876 18551021 ~ 18567654 (+) True hspa4l
XM_007252517.3 mRNA upstream 40841 18523754 ~ 18528689 (+) True mrpl35
XM_007252518.3 mRNA upstream 48583 18511622 ~ 18520947 (+) True LOC103033848
XM_007252519.3 mRNA upstream 59061 18503191 ~ 18510469 (+) True LOC103034157
XM_007252512.3 mRNA downstream 1298 18580869 ~ 18632555 (+) True LOC103031945
XM_022672860.1 mRNA downstream 1721 18581292 ~ 18632555 (+) False LOC103031945
XM_022672865.1 mRNA downstream 54598 18634169 ~ 18704075 (+) True eml5
XM_022672866.1 mRNA downstream 54599 18634170 ~ 18704075 (+) False eml5
XM_007252505.3 mRNA downstream 54599 18634170 ~ 18704075 (+) False eml5
XR_002650340.1 other upstream 48583 18511622 ~ 18520947 (+) False LOC103033848
TU109874 other upstream 105434 18460130 ~ 18464096 (+) False LOC103035760
TU110107 other downstream 350667 18930238 ~ 18930754 (+) True G81704
TU110177 other downstream 1086165 19665736 ~ 19666047 (+) True G81761
TU110179 other downstream 1093556 19673127 ~ 19673638 (+) True G81763
TU111179 other downstream 3778073 22357644 ~ 22358135 (+) True G82488
TU111323 other downstream 4650859 23230430 ~ 23231318 (+) True G82609

Expression Profile