RNA id: XM_022672862.1


Basic Information

Item Value
RNA id XM_022672862.1
length 8560
RNA type mRNA
GC content 0.48
exon number 43
gene id atg2b
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 18716538 ~ 18749129 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAGTTAACTAGCCTGCTAGgGTTTTTACCTCTTGCTGAACTGTACCTGGCAGTTTGCTTCTCCCAGAACTGCAGTGTTTCATTTCTAGAGCTATTGGACCTCTCCTAATCTGCAGAATGATCTGGCCAGCAGGACATTTAGAGTCAAGTGCAATATCTTTGAGTCTCCCCCATGGAAGTACATTGTTTTCTTAAATTTATATTTGGTTGTCTACAAACTGAGTTGAGGAGCTAGACACGATGCCGTGGCCTTTTTCTGAGTCCATTAAGAAGCGGGCCTGCAGGTACCTGCTGCATCGTTACCTGGGCAATTTCCTGCAAGAAAAACTAAGTTTGGATCAGCTTAGTCTCGACCTCTACCAAGGCACAGGTTCACTTGCACAAGTGCCACTGGACAAATGGTCACTGAACGAGATTCTCGAGTCGGTGGATGCTCCCTTTGAAGTAAGTCAGGGCTTCATCCAGGCTATCTCCCTGACTGTACCATGGGCCTCGTTACTACAGGACAATTGTGCCCTGGAAGTGAAAGGCTTGGAGATGGTTTTCAGGCCAAGGCCTCGTGTGGTATCTGGCACGGAGCCTATGTACTGGTCTAGCTTCATGACGAGCAGTATGCAGCTGGCAAAGGAGTGTCTGAGTCAGAGGCTCACTGATGATTTAGGGGAGAGCTTCCAGCCTCTGGAGGGTCTTGAGAAGTTTGCTGAGACGATAGAGACAGTTTTAAGAAGAGTCAAGGTCACATTTTTGGATACAGTGCTCAGGATTGAACATGTTCCAGAAAATTCCAAAACCGGGTTTGCCCTTGAAATACGAATTAGTAGGATGGTTTACTGTGACGAGGCTGCTGAAGAGGGCTCCAGTGTGAATGTTCACCAGCCCACCACATTTGCACACAAGAACTTGACTCTGGAGGGTGTCACTGTTTTCTGGAATGAGTTTTCAGAGACGATGCGCGCAAGCTTCAAATCTTCCCCAACTCAATCAGAGATTGAGCCCAAACTGTCTCCAAGCTGGAATCCAAAAATTATTTGTGAGCCTCACCCTCAGTTCACGGAGCCTGTGTGTGCCAGCACGCCATTTGAACCTGTGCAGGTGGGCTGCCTCAGTGGCAGACTGGAGCTGTCCCTGGTGCTGAAACAGAATGAAGCCATGCCTGGAGCCAAGTTGGACATTGATGGACAGATTGATTCACTGATCATGCTGCTCTCACCACGACAAGTCCACCTCCTGCTGGATATGTTTGGAGTTTTCTCCAGTTCAGCAGGACAGGAGTGGTCTGGCTTGGCTAAGGATAAAAAGAGTCGGCCCATGCAACAAGAGGATGAGTACCGTCTCCATATGGAGCTCAACCGCTGCTTAAAAAAGGAGCCAATGTCCGCTGCCACAGATCAAGACTTATTTGAGAGCCAGACCACCAGAACGGTGTCCAGTCGAGAAGATGTATTCTTTTCGATGGCTGATATGGACATGTCACACAGTCTATCATCTTTGCCTCCTCTTGGAGACCCGCCCACCGTTGATCTTGACCTGTCTCTAAACAGTAACTATTCCACATCCCTGGGGGAATCACCTTCTGCCAATGCAGCTGCTGGTTGGGACGAGTACATGGATATGCCTAAACAGAAGGAGAAACAGACTCATGAGACACCTCTATTCACCAGAGACTCTCAGCTTCCACAGAAGCTGCTCAGACAGACCTCTCATTCGACTAAGGGCCACTGCGATGAGTCTAGGCCTGAGTTAGTCTTCAGGCTCTCTGTGGGCAACCTTTGCCTGTCGGTTCTCCACATTGACCCTCTGCCACCACCAGACTCCACCCTGAGCCCTCTTGCTCCAATGGCCTCAGAGTTTTTCCGTACAGTAGCTGTAGATAAGCTACAAGCAGGTGGCTTCCTCCAGTCCCGGGCTGTTTTTAACCAGGCCTGTCCTCATGATCACCTCAGGTTTGTAGGACAGGGTTTAAAAGTGACCTATGAGCACTGTCAGGGTTCTAGTCTGCGCACTCTCAATACAGATCTGTCTCTGAGTCGTCTGGAGCTGCTAGAATGCCTGTACCCTACAGAGAACGCCAGCATTAGCAGCATGCAGAGTGGAGTACAGTACACAGAGCTCCTGACTTTTGACGAGGCTAGCAGCAGTGACTCTTCAACCGACACTTGTCTTCATCTGCTCTACAAACTAACAGAGCGCAAAGGCCCACAGGGTGGGCAGGTACGCCTGAGTGCAATGCAGCGCAAAGCTGACTTTCAAGTGGAGCTAGGTAAAGCTCGATCAGAGTGTGACATCAGCATCGTAGACCGCCTCAACTCCCTACTTCAGCCTCAAAAACTGGTCACCACTGAAACCATGGCCTCCCATATGTACACCTCCTATAACAAGCACGTCAGCCTACACAAAGCCTTTGCAGAAGTGTTTCTAGAAGATAGCCGTACCCCTGCACACTGCCTGGTGTCTGTGTCTGTGGGAGCTCCAAAGCTGGTGCTGGTGGTCCGGTTCCCAATCCCAGACTTGCGCTCAGATCAAGAGAGAGGGCCTTGGTTTAAGAAGTCCCTGCAGAAGGAGGTGCTGCGTCTGGAAATGGAAGATTTTGAGCTCAAGTCTGAGTTCACAGGGGGCAGCTCTCCAGAGCAGACCAAGATGGAGCTCACCTTCAAGGAGCTGAGTGGTTTTTTCCAGAATGACAAAGACCACTCTACAGCTAGGTTCTTACGTGTGTCGCACAccatggaggagaacatggcctCCTCAGACAGTGGCAAATTTGATTGGCCCAGAGTGGTGCTGAAGGTGAACCCCATGGCTGTGCACTCCATCTTAGAGCGGATTACAgctgaagaggaagaggaaggtgCGGACGGACATTcacaggaggaagaggaggaggaggaaggcgCGGCCCACTCTTTAAAGGATGTGTGTGATTTTGGCAAACCTGAACCCTCCCCTTTCTCGTCACGGCGAGTCATGTATGAGAATGAGGAGatgGTGATCCCAGGTGATGTGGTGGAAATGACAGAATTCCAGGAGAAAACCATGAGCAACTCCCGTTACATCCTAGAACTGGCTTTTCCAAATGTGCAGTTATCACTGCCCAACAAAGCTTTCTATGAGAAACTGCACAACAGaaTTAATAATGATTTGCTTCTGTGGGAGCCCACGGCACCGTCTCCAGTGGAGAccgtggagaacatgccatatGGGATGGGTCTTTCTGTAGCTAGCCAGCTCATCAGCACCTACAGCAAAGACAACTTCAGCCAGTTCAGGTCCACTGGCCCTGAGGaagAAGATAGTGGCTCAGAGGAGGAAACTATGCAGTTCTACACCCCAGCTGAGCTGGGCTATAGGaacatgagaaagagaaagaataagatGCAACCCAAGAACTCGCAGAGTCTGTTTTCTGTCCTTCTGTCTGTCAATCACTGCCTCGTTGCATTGCATACGGAAGCTAAGCAAGAGGATAAAAGTGTTTTGATGAACAAGCATGGAGAGTTCTGGATGGAGATGAAGAATGGAgtggtgttcagtgtgatgcaGTATGAAGGCTACAAGGACCAACATTACATCTGTTTCCACACTTCCAGCATCTGCCTCTATCATCATGGTGCAGTAGACGGAGATGTTCCTGTGTGGGACATAAAACTGCCATGCAGGACACGACCCCATTGGCTGGAGCCGGCGGTCTATGCATGCGAGTCTGCAGCTGAGAGAGCTTCTCCCTCTGGAGCGCTCAGTGTGGAGGCCCATAGCATGCTGGCCCTTGCCGTCAAGGTTTCCTCTCACAGCACGGAGAGAAATGTGAAGGAGTTTCTTATTGCTATTGGGGTGAGAGGAGCCACACTGCAGCACAGAGTAGTTCCCTCCAGTCTGGGCTGGTACGATCAGatAGTAGATTTTCTAAATGTGTCTGATGAACCTGTGCTTGGCTATACACCACCTTCCTCTGTTACTACCCTCCACCTACACCTTTGGAGCTGCTCCCTGGACTACAGGCCTCTGTATTTGCCAGTGAGGTCTCTTCTCACAGTGGAGACCTTTAGTATCTCCAGCAGTGTGTCTCTGGATCACTCCTCTTCTTCACTCAGAATCATTCTAGATGAAGCAGCACTCTTTCTGTCTGACAAGAGCAACGCTGTGTCTGTCAACTTGGCTCGAGACTATGTGCAAGTGGTGGACATGGGAACTTTGGAGCTTAGAATCACCGCAGTCAAGCCTGGCACAGATGGGGAAAGGACTGAACCAAGGTTCGAGCTGCGCTGCTCGAGTGATGTCATTCATATTCGGACCTGCTCAGATTCCTGTGCTGCACTTATGAACCTCATTCAGTACATCGCCAGCTACGGGGACCTGCTGCCACCATCCAAGCAGGAGAGCAGGAGTAGCACTCCCAAACAGAGAGCAAAGTCAGATGTAGTTAGCCAGCCTCCATCCCAGGCCCCTCTGCTCCCTGAGGCTGAGCAGCAGATGCTGCAAGACCTGATGAGTGACGCTATGGAGGAGACAGACTCCCTGCAGGGACACACCCTGCAGTCCAATGGTGTCCAAGAGGATCATATAAGTGACCATGACCCACCACGCTCTGATCTCTTCCTCTTCCCGGATGAGAGTGGAAACTTGGGGCAGGAGCCTAGTCCAGTCTACCCCACACTGCATTCACCCCTTATCTCCCCACCTGCACCGAGCACACACCACGACTCAGATGATTTCTGTATCCTGGACTCTCCAGGCTCCAGAGCTGCAGAGAGGGATGAAGAGCCAGTTGTACAGAAGCTGACCACTGAGCCCATtttggtgctggagaaccaTTTTAGTGAGCCTCTAGAGGGCACCAGTGGCAGCAGGGGCCCATTGCACTTTCCCGTGCCTGAGGTCAGGTACTTGGTAAAGGAGATCTCTGTGATTTGGCACCTGTACGGCGGAAAGGATTTTGGCAGTGGGCCACTGTCCTCCTCTCCAGCCCGCAGTCGAGGGTGCACTCCTCATAGTTCCCCCTCTCAAACCCCAGTGAGGCAGGTCCGGAGTGGCTCTCGCTCTGGGGGAGGGTGGGGCAGGAACCCAGATGTGCTGATGGAGATCCAGCTCAGCAAGGTGCGGTTCCAGCATGAGGTGTACCCCCAGGTGTCTCCTGAGGCCAGCTCACTGTCTGAGCAACCGGTGTCCAGACAAGTGTTCTCAGTGCAGGACTTAGAAATACGAGACAGGCTGGCCTCCTCTATGATGAACAAGTTTCTTTACCTCTACTCCAGCAAAGAGATGCCCAGGAAAGCCCATTCCAACATGCTTATGGTTAGAGCACTTCACATGTGTCCAGAAGCCGGCCAGGCTCCTCAGGAGTGCTGTCTTCGTGTCTCCTTAATGCCTCTCCGCCTCAATATTGACCAGgaTGCTCTGTTCTTTCTGAAAGACTTTTTTACCAGCCTGGCTGCAGATGTGGAGCTTTTTTCCCCACCAGAACAGGAGGCACTTTGTGTATCTGTAAAAAAGCCTCCTGGGCCAGAGGTAGCGTGTTCTTTCTCCAAATATAGCGGGGGAGCAGGTCAAGACCCTGTGCCAATCATCTCTGTGCCTACCCAAACACGCTCTAGTCAGAACGGCCTTGGAGCCTCAAGCCATGAGCATGTGCCTGAGTCTGCCTCCACATCCTTCACTGATCAGCCCATCTTCTTCAgAGAGTTCAGATTCACTTCTGAGGTGCCGATACGTTTGGATTACCATGGAAAACATATGGCCATGGAACAGggcacTTTTGCGGGGATTGTAATTGGGCTAACCCAGCTAAACTGCTCAGAACTGAAGCTGCGCCGACTCTGCTACCGACAAGGACTGCTGGGTGTGGACAAGCTGTTTTCTTATGCCATTAATGAATGGCTCAGTGACATCAAGAAGAACCAGCTGCCAGGGCTGCTTGGTGGAGTTGGACCCATACACTCTCTAGTGCAGCTTGTCCAGGGATTTAGGGATCTTGTGTGGCTGCCTATAGAACAGTATCGGAAGGATGGGCGGATTGTGAGGGGCTTCCAAAGGGGCACTGCCTCATTTGGGACCTCTACTGCCATGGCAGCCCTGGAGCTGACCAATCGCATGGTGCGGACCATCCAGGCAGCTGCAGAAACAGCCTATGACATGGTGTCACCAGTGCCAGATGAAAGAGAATGCAAAAAGATCAAACGATATTCATGCTATCGACTAGCTCATCAACCTGTGGACCTCAGAGAAGGTGTGGCCAaggcttacagtgtagttaAAGAGGGCATTGCAGACACAGCTTTGACGATTTACGACACAGCCACCCGCGAGCACGAGCAGAGGGGCATGACAGGCGCAGTTGGTGGAGTCTTGCGCCAGCTGCCTCCTGCTGTTGTCAAACCTCTGATCGTTGCCACAGAAGCAACCTCCAATGTGCTGGGAGGCATGAGGAACCAGATTCACCCAGATGCTCGCCAGGAGGAGTCGCAGAAATGGCGTCTGGGAGAGGAGTAAACAGAGAGGGCTTGTGCAGGTTTCAGCCTGACGGCCATGATGGATGCACTGAATTGCTAATCAGACACTACACAAGATTGGCATGTTATCACCTGGTGTCTTCAACAGCTGATCCATAGTCAGGCAGTCAGTGTTTCCTTTATGCTGCTTATGAGTTTATTTAGGGCCATGGTGGTGTCTCACTGACTCATTCAACAGATTGAGAATCAACAGAGATTCAGCAAAGACCACAGTAGCAAAGCTCTAGCTTACTTTAATGCTGCTTTCAAAGGCAGAATATTACCGGACTTAATTCCTTGCTTTATTGGCAGCACTTTTCATTGAAATGGAACTGTAGTCATTTGATAATAATATGTCTCAAAGCAGCAGCTTCGGAGATGAGCATTGTTGTCAGcataaataataatcacaacagATTTGTCTGAAGTTCCTTCCTCTTTCCTGTACGCAATGGTATGAGTACTTTTCTGTAAACTTGCTTTTTCGACGCCCCACTGACAGACATCCTTTTAGTGCCTTCATAGGATTATTATAAAATGCTTGTTAATGTGTGCTCAAAACTTTCCATGAAAGATATGTCTTGTGTTGAGCGTGATTACTGtgccattttatttattctatccAGTGGTGATCAATGAGTTTTCAGGTGTCAGGCTCAGTTTTGACAAGTTTGATAATCTGCACACAAGTTGAGGGGTATACCATACATCACAGTTTGTTGGTTTAGCCAGATAACTTAAGCCCAAAGTCGAGTCCAATACGAAAAGAGCAATGGGGCATTCCTAATAGACACTCCTCGTCTTTCGTTCTTTAAGATATCTGGCTCCCTAATGCTGCAATCCTTTTGAGCTCGGATTTCCTACTCAGCAAGTTTAGAGAGCCTCAGTAGCCCAAaattcagaatccaagatggttTCATTACTCATTAATggtagtaaaagcagtagtgTTATACTGTGTATCACttctatttgtattttattaaattagtcTTAAATCAGTCTCCAActtctatttgtttaaattagcaaaatactgtataatgcatTGTCATCCACTGGTATCGCTATCAGTGCCAACCTGGAACAATACTAACAATGGTAGCTGATAACTGAAATGCTGCCAGCTCTGATATCCGAGGTAAATGAAATGCAGCATAAAGAACTCTGCTTTTTGGTATGCCCTTAGATCTCTGGCAAacattttgaagagtttattgttgtgttttcaATGCCATTGTCTCTTGGAAAAATGAATAAGAACAAGGGATAAACAGACagattattactttttttacactctAGAAAATCCACCTCTTCTACCCAGTTTATTGgctttgtttagtttataaaacattgtttattgGACTCACACTTACCTGTTTGCAATTAAACTGTATTGAATTCCAGTTGTAGTAGCTATAATACGGCTGTAGAATTAAAAATGTTTCCCTAGATTTGTCTTTAGCACCAtgctttaaaaattatatttggaCATTTTGACAATATTTTGTTGTAATGGtcacttgcactttttttatgTACACTGATATACTTTTAAAACTGAGGTCATGGTTTTTGGTGAGGTGGtcagtgtatatactgtatctgcTTGTAAGACATACTTCTCTTAAGCAGCTTTATCTCAGAAAGGACAGAAATCTATATTCTCCACACAAAACACCaaatgtcatttaaaacaagcaaacaaacttACTCATCTTTATGCATATCATATGTCTTTAACAGGAACCTATTTGAACTTATTTGTACAGATTGTGCAATCGTGAATTGTACAtgtgctttcttttttcttttctttttttttacacggtTATGTAAGACATTAGATTAAGCATTTGGGAAACTGACAGATGCATTGCATTTGCGTTAGAGTTCAGAGAAAGTGATTTGCATCTGCACAACTTTCTCTTAAGTACTTAACATTTGtgatggatgttttttttgttcaaaaggTAGTTGAAGGTCTTGTACATAAATGTAAAGTTaatttttgcagtttatatgaaaGCATGTATATCAAcaaaaagggaaataaaataTCTAATGTTGACCCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109963 lncRNA upstream 641 18714205 ~ 18715897 (+) False G81602
TU109957 lncRNA upstream 10256 18704815 ~ 18706282 (+) True G81600
TU109895 lncRNA upstream 166331 18545469 ~ 18550207 (+) True G81558
TU109865 lncRNA upstream 215827 18447388 ~ 18500711 (+) True G81539
TU110103 lncRNA downstream 116547 18865676 ~ 18865988 (+) True G81701
TU110111 lncRNA downstream 182027 18931156 ~ 18937144 (+) True G81705
TU110115 lncRNA downstream 192279 18941408 ~ 18941814 (+) True G81708
TU110135 lncRNA downstream 551229 19300358 ~ 19324568 (+) True G81725
TU110136 lncRNA downstream 551229 19300358 ~ 19324211 (+) False G81725
XM_007252508.3 mRNA upstream 3651 18708412 ~ 18712887 (+) True npc2
XM_022672865.1 mRNA upstream 12463 18634169 ~ 18704075 (+) True eml5
XM_022672866.1 mRNA upstream 12463 18634170 ~ 18704075 (+) False eml5
XM_007252505.3 mRNA upstream 12463 18634170 ~ 18704075 (+) False eml5
XM_007252507.3 mRNA upstream 12463 18634170 ~ 18704075 (+) False eml5
XM_022672874.1 mRNA downstream 1564 18750693 ~ 18763574 (+) False msh4
XM_022672872.1 mRNA downstream 1567 18750696 ~ 18764580 (+) False msh4
XM_022672871.1 mRNA downstream 1567 18750696 ~ 18764122 (+) False msh4
XM_022672869.1 mRNA downstream 1568 18750697 ~ 18764580 (+) False msh4
XM_022672870.1 mRNA downstream 1568 18750697 ~ 18764579 (+) False msh4
XR_002650340.1 other upstream 195591 18511622 ~ 18520947 (+) False LOC103033848
TU109874 other upstream 252442 18460130 ~ 18464096 (+) False LOC103035760
TU110107 other downstream 181109 18930238 ~ 18930754 (+) True G81704
TU110177 other downstream 916607 19665736 ~ 19666047 (+) True G81761
TU110179 other downstream 923998 19673127 ~ 19673638 (+) True G81763
TU111179 other downstream 3608515 22357644 ~ 22358135 (+) True G82488
TU111323 other downstream 4481301 23230430 ~ 23231318 (+) True G82609

Expression Profile