RNA id: XM_022672891.1


Basic Information

Item Value
RNA id XM_022672891.1
length 4162
RNA type mRNA
GC content 0.46
exon number 18
gene id LOC103040036
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 19800197 ~ 19828205 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAGGGGGGCACTCTGCAGTTTTGGAGCGAGAGGAAAAAGCACAGGAGCTGGTTTGCACAGTCTTGGGTGTGGAAGACTTTGGTTGGCAGATGTTCCTCCAGAAAGCCACTAACAGGATGAAGATAGTCAGCCACGTGGACCCTGAGAGATTAGGCGCGGTTGGGTGGTAAACAGATTAGCCGAGAGGCTCCATCTTTAACCTTCTCACTCCTGTGACACCCATCCTCCAAGCCCACATTCACACGCACTCTCAGCCACAGGTTACAGCCTGTGCCAGAACACTCTACCGCTGCCCTCAGGGACCGAAAGTCTTCACTCCTCTGCTGCTCCTTCGCCCTCTGGTCTCTCAATGGAAACCTGGACTTGGTGTCTGTGGAAGCGTACCTCATCCCCAGTGGACCTCAGATAAGTCACTGAAGACCGCTCCCCCCTTCATCCCCAAATGACTGGCTTTGCATCCAAAAGGAAATAAAGCAGTGCATCATGCCATTGAAAACAGGACTATTCCTCATCCTGTTCTTGTTTACCCTCCAAGCCACCAGAATCAAAGATCTTAGAAGCAACGATATCTCAGGAATCAGAAATGTCAGATACAGGCATTTCCTTGGGGCAACACGACCAGTACGACAGATACCCGCTGCACGAGTCTCAGTCGACCAGAGCAGGCAGCATCGAGAAAAGAGATCAGCGCTGTTCAGCACAGGGGTGAAAGTGTGTCCTCAGGAGAGCATGGCAGAGGTCATCTCCAGTCACAAAGCCTACTACAAACTGAGAGTCTGCCAAGAAGCAGTATGGGAAGCTTTCCAGATTTTTCTGGACAGAGTACCAGACACTGTGGAATACCAACAGTGGGTATATGCCTGCCAGAGGGACTCTCTATGTGTGGACGACTTGGCCCGAAACTTCAGCAGCACCCAAGAACACCTTGATATGGTGGCTAAGCAAGTGAGTTCTCAGGAGGAACTGGAGAGTGCCCTTGCCACACCATCGGCACCAGGCGAGAAATGTTCCAAGACTCCTGGAGAGCTACTTGTTATGGGATTAGATCTGACTGGAACTGCAGCCCCTGTCCCTGCAGAGCTGGTGGAGCACATAATAGAGTTTAGCGTGACCGTGGTGGACCCAGGTTACAGCGACTTACTGAGAGACCCTGACAGCTTACAGTATCAGGACGTCAGCCTTAACCTTCACGAGCAGATGCTGCAAATTTTCAGCAAACTTCCTGGGTTTAAGGAGATTCGGCTGCTGGGATTCCAATCTGGAGGTGGTACAGTGCGCTACGCTGTGGTGTTTGAATTAGAAGAGGACACTACAGAAGCAGCCCTAAAGGATATGGTGGCAAAGGCCCTGAGTGAGGATAAGGCCCTGCCTTTGGACCTTCATTCCCTCAGTTTTGAACCAGAGAGACCACAAGACCACATAAGGTATTTACCTGGGGGCATCATTACACAACCTACAGTGGCCATCTCAGAAGAAAGTTCTGTGGCCACTAGCATCTCCATGAGCGATGCAGCTTCTAATGGAACACCAGGGAAGAGGGATGAGGAGGCAGCGGAGGGCACTACACAGGAAATATTCAAAGGTTTGCCTCCAGAGACTACATTAGCAGGCACAACCGAGCGACCCCCTCCCGACACAACGGGACACTCgcagctggaggaggaaaaGCTGATCACAGAGAACACTCAAATAGCTGAAGGACCTAAGAAGAACACTACTTTGGATTACCCTTCAAAACCATCTGAATCTCAAAACGATCTTGTAAATGAAATTTTCTTCACAGCTGCAACACCAAACTTAAATTCCTTTGAAGCTGTAACTACTTCAGTTCAGGTCGGTTCATCAGCTATGCCGTCCACAGAGGTCCCTTCAGAAGTAGCTATAAGAGGTGATGTTATTGGACCATCCTTGGAACCTCCTGAATCCAATAGCCCACTAGACAGCCCTGATGTAGTTAGTGTAAGTGAACCTAGTGAGACAGAGTTCCCATTACCACCTAGCACTACAGAGAACACACAGCCAATAGAGACTCCACCAGTACTTGCCACACCTAATCCAGTTCCTCCTGTAGACATACCCTCTGTCTCCTCGGTATTACCAGTAATTCCTGAGAGCGATCAACCAGAGAGGATACCAGATAGTGACATAAACATGCAGGAGGACGTAGAGCAGACAGAGGAGGAAACAGACACCAGTGACAATCAAGACTACGGTGGAGGATTCGAGGCAGATGAGCACCCACAGTCCTCAGCTCCTGATATCGCTGCCAGTCATGCCAGAGACCTGGTAGTGTTTTTTAGTTTGCGAGTGACCAACATGGTCTTTTCAGAGGATCTTTTCAACAAGAGCTCTCCAGAATACAAATCACTGGAGAACACTTTTCTCGAACTGAGGCAAATCCCAGAACCTGAAAACTTGCCAAAGCCAGAGGTATCCAATAAACAGACTGAGAGGGAACAGAGGACATTAGCCTCAATACCGCTTCTTCCATACCTGCAGTCCAACCTGACTGGCTTTAAGGAGCTGCAGATTCTCAACTTCAGAAACGGCAGTGTGGTGGTAAACAGCAAGATGAAGTTGGCCAAACCAGTCCCGTATAACGTAACAGAAGCTGTGCACTGTGTTCTTGAAGACTTCTGTAATGCTGCGTCAAAAAGACTAGACATAGAAATTGACCCTGAGTCGGTGGATGTGGCAGCAGGTAAGCAGATCTTTGCATTAATAAAATCGGAtaTGAATGATGGTGATCCGTGCAAGTATTTGGACTGTAATGAATTCTCCCGCTGTGTCGTAAACACACTGACTGCAGAAGCTGAGTGTTTGTGTGATCCTGGCTACAGCACGGAGAACGGCCAGCCCTGTGAAAGCATCTGTAACCTCCAGCCTGACTACTGCCTAAATGGGGGGACCTGTGAAATCCTAGCAGGCCATGGAGCCACTTGCAGATGTCCTTTAGGAAAATTCTGGCACTATCATGGAGAGCGCTGCAATGAACTGGTTTCTGTACCTGTTGACCCGCTGCTTTTCGTAGCCTGCCTGATTGGAAGTCTCACTGTGGTTTGTGCTGTGATAGGCATCTTGGTTTTTATTAACAAGAAGTGCATACGGACGAGAAAGACCGTGTCACTAGTGCATTCACACTCCTCCCTCCCCTTTGAGGGTACTATGAGAGTGAATTCTGCTTTTGAGAATGACGAGGGTATCTTGACTCATGTGTCGAGCATCTGCTATCCTATAGGCTCTGACTCCGGGTCCTCTATGCTCTCAGAACACGGCACATTTAAGTCACATTTGAGTTTTGAGATCCCCAGACAACTCTACACAAGAAGATCAGAAAGGCTAGTGCCGGAAATGGTTGATTTCCACCACTGTATACCACACCATGATACATGGCGGCTGTCTAATGAACACAGGACCTCGTGCTGTTTTCTAAGGGGACCAGACAGTGACAGCTTTGAAGTGACCATATTATAATAGTGATTTGATGGCCATTTCTGAGCTCAGCTCGGCACCAAAGGTCTTCAGTGGTCTTCTACACGAACTATATTCAACTCTGTTGGCTTTTTATAGACACTTGGAATGCACATAAAGCTGATGGTGAAGGTAAGCATTGAAGCTCTCACCAATCAACCATGGAGCAAATGGAAACACTCCATTGAGTAAAAGCAAAAGACTGGTTTGGAAGCACGGTCAGACACTTAGAACTGGTtggatattgtttttttccttgtcaaaggtgattttttttgttctttcctCACAATgaggtatttatttacaaatggaTACATTTGGTGGTATCATAGAGAACATAGATTATATGACTGCTCGAACAGTACTCAAACCTCTCTTCAGTAttccaaaaaaagaaactgaatgtaaaataagctgttcatttttatgcttgttatttaataataataataataataataaaaaaactattcagACAGGAATTAGGCCTAATATTCTTATAAAGATATTAGGATAACTAACAACCTTGAAATAACCTAAAACTATTTTGCATGGAAATGCATGTTTCTCTGCAGTCGCTCGTGTTTTGAAAGCCAGACCAAAACACACAGGGAGGCAAggattgatttctttttttattcacttttacaatgaacagaacaaaataaaaaaagaaaacaaaagctta

Function

GO:

id name namespace
GO:0034587 piRNA metabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650344.1 lncRNA upstream 55769 19722199 ~ 19744428 (+) False LOC111193210
XR_002650343.1 lncRNA upstream 55769 19731185 ~ 19744428 (+) True LOC111193210
TU110185 lncRNA upstream 123308 19676563 ~ 19676889 (+) True G81769
TU110160 lncRNA upstream 253589 19543382 ~ 19546608 (+) True G81745
TU110155 lncRNA upstream 268610 19529427 ~ 19531587 (+) True G81742
TU110252 lncRNA downstream 72958 19901163 ~ 19908098 (+) True G81822
TU110261 lncRNA downstream 92864 19921069 ~ 19924676 (+) True G81827
TU110268 lncRNA downstream 116930 19945135 ~ 19948417 (+) True G81830
TU110304 lncRNA downstream 162334 19990539 ~ 19991729 (+) True G81856
TU110373 lncRNA downstream 321572 20149777 ~ 20179530 (+) False G81899
XM_007252195.3 mRNA upstream 32889 19765336 ~ 19767308 (+) True LOC103039716
XM_007252500.3 mRNA upstream 970240 18810473 ~ 18829957 (+) True LOC103028664
XM_007252503.3 mRNA upstream 999979 18765653 ~ 18800218 (+) False ktn1
XM_007252188.3 mRNA downstream 322213 20150418 ~ 20154682 (+) True LOC103037509
XM_007252180.3 mRNA downstream 333063 20161268 ~ 20174309 (+) True LOC103035446
XM_022672912.1 mRNA downstream 356705 20184910 ~ 20199839 (+) True tmem62
XM_007252178.2 mRNA downstream 384904 20213109 ~ 20246310 (+) False elmsan1
XM_007252176.3 mRNA downstream 392125 20220330 ~ 20246310 (+) True elmsan1
TU110179 other upstream 126559 19673127 ~ 19673638 (+) True G81763
TU110177 other upstream 134150 19665736 ~ 19666047 (+) True G81761
TU110107 other upstream 869443 18930238 ~ 18930754 (+) True G81704
XR_002650340.1 other upstream 1279250 18511622 ~ 18520947 (+) False LOC103033848
TU109877 other upstream 1336101 18460130 ~ 18464096 (+) False LOC103035760
TU111179 other downstream 2529439 22357644 ~ 22358135 (+) True G82488
TU111323 other downstream 3402225 23230430 ~ 23231318 (+) True G82609
TU111569 other downstream 4047234 23875439 ~ 23877767 (+) False timm9
TU111570 other downstream 4047234 23875439 ~ 23877767 (+) True timm9
TU111581 other downstream 4081477 23909682 ~ 23920698 (+) True G82811

Expression Profile