RNA id: XM_022672920.1


Basic Information

Item Value
RNA id XM_022672920.1
length 7761
RNA type mRNA
GC content 0.52
exon number 36
gene id LOC103047712
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 21141773 ~ 21189268 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTTTCTGGGATCAGGATGAGCAGCCCGTGTCTGTGCCGTGCTGTACCTGTCAGCAGCCAGACTCGGCTGCGGGAGGTCAAGCTCAGCCTGAAGACCAGCAGAGAGGCCAGCACCATCCGGCCCAATGTGGTTGCCCGGGAGATCAGCAGCCGGGCGTTTTCTACCACTAAAGAGGTGCCCGTCCGGGTCAGCACGACCCCCAGCCGGAGCAGGAGTACCCCTCCAGTCTACAGAGCCCAGCGTCCCGACAGCAAGAGAGGTCCCAAGACTAACGGCCACAAACCTGAGCATCTACCTGAGAGGAATGGAACCCATTTGGACGTCCCATCTCCAGGAGCCCCCTTCACAGTATCTCCTTATTCCTCTTctacctcttcttcttcttcctcctatACTCCAAGACTCACCCGACCTTTGTCTTCTCGCCCACCGCCTtcgtcctcctcttcctcagctTCACAGGGCATGAGGCGCACCCGCTGGCTGAGCTACAGCACCTCCAACATCTGCTTCAACTCCATCCTAGACGGAAGGTTTAGACAACTTCAAGATGAGCGAGAGGCTGTGCAAAAGAAGACCTTCACAAAATGGGTGAACTCCATCCTGGCCAGAGTCAGCTGCCGGATATCGGACCTCTATCTAGACCTCAGGGACGGGAGGATGCTCATCAAACTGCTAGAGGTTTTGTCAGGGGAGAGGCTGCCCAAGCCCACCAAAGGCCGAATGAGGATCCACTGTCTGGAGAACGTAGACAAGGCGCTGCAGTTTCTAAAGGAGCAAAGAGTGCATTTGGAGAACATGGGATCACATGATATTGTAGATGGCAACCACCGGCTGATTTTGGGCCTCATCTGGACCATCATTCTTCGCTTTCAGATCCAAGACATTGTGGTAGAAACAGGACAAGCCGACCAGACAGGAAAGCAGGAGACACGCTCAGCCAAAGACGCCCTGCTCCTTTGGTGCCAGATGAAGACTGCTGGGTACCCAAATGTCAACATCACCAACTTTACCACAAGCTGGAAGGATGGCTTGGCTTTCAACGCTCTCATTCACAAACACAGaccAGATCTGGTGGACTATGGCGGCCTGCAGAGATCCAACCCAACTCACAACCTTCAGCAAGCTTTCAACATGGCTGAACGACAGCTTGGAGTTACCAAGCTCCTGGACCCAGAAGATGTGTTCACTGAGAACCCAGATGAGAAGTCCATCATCACATATGTCGTTGCCTTCTACCACTATTTCTCCAAGATGAAAGCTCTGGCAGTTGAAGGCAAGCGAGTTGGTAAGGTGCTGGACCATGCCATTGAAACTGAGAAGATGATTGAAAAGTATGAGACACTTTCCTCCGACCTGTTAACATGGATCGAACAAACCATCATAGTGCTGAACAACCGCAAACTGGCCAACTCTCTCAGTGGGGTCCAGCAACAACTGCAGGCCTTCAACTCCTATCGTACTGTTGAGAAACCACCCAAATTCCAGGAGAAGGGCAACCTGGAGGTTCTGCTGTTCACCATCCAGAGCAGGATGAGGGCCAACAATCAAAGAGTTTACACCCCTAAAGAAGGTGCTCTGGTCTCAGACATCAACAGGGCATGGGAGAGACTGGAGCGGGCCGAGCATGACAGAGAGCGTGTCCTGAGAGATGAGCTCATCAGACAAGAAAAACTAGAGCAAATGGCCCGTCGCTTCGACAGGAAGGCCGCTATGAGAGAGACCTGGCTGCTGGAGAACCAGAGACTGGTATCACAGGACAATTTTGGGTATGATCTGCCAGCAGTGGAAGCAGCGAAGAAGAAGCACGATGCCATAGAGACAGACATTGCTGCATATGAAGAACGTGTGCAAGCTCTGGTGGCCTTGTCCAAAGAGCTGGAGGCTGAGAAGTACCACGATGCTAAACGCATCGATGCAAGAAAAGACAACATTCTGAGACTGTGGGACTACCTCCAGGAACTTCTGAAAGCTCGCAGGAGCCGCCTGGAGAAAAATCTCACCCTGCAGAGGATCTTCCAAGAGATGCTGTATATCATTAGTTGGATGGATGAGATGAAGGCTCGTCTCCTGTCTCCTGACTTTGGGAAGCACTTGCTGGAGGTGGAGGATCTTCTGCAGAAGCATGCTTTGTTGGAGGCAGACATCGCTGTGCAGACAGAAAGAGTACACTCGGCAAATGCCGCTGCTCTCAAGTTTGCAAATGGAGACAGCTACAAACCTTGTGACCCTCAAGTTATTCGAGATAGGGTGCAGCACTTGGAGCTCTGCTATCAGGAGCTGTGTGCGCTTGCCGCCCAGCGCAAGGCCCGCTTAGAACAGTCCCGTCGCCTCTGGAACTTCTTCTGGGAGATTGCAGAACTGGAGAGCTGGATCAGGGAGAAGGAGCACATCTTTTCCTCTCTTGACTATGGCAAGGACCTGACCAGCGTGCTTGTGCTACAGAGTAAGCACAGTGCCTTTGAAGACGAACTGGGGGCCCGCCGTGATCACCTAAAGCAGGTGATGGGTGAGGGCGAGAGTATGGTGAAGGCCAAACACTTTGGTGCCCCTAAGGTGCAGCAGCGCATGGACGACGTACAGAGACAGTGGCAGCAGCTGGAGGAGCTGGCTGCTTTCCGTAAGCAGAACCTACAGGACACTCAGCGGTTCTTCCAGTTCCAAGGTGATGCGGACGACCTCAAGGCCTGGCTGCTGGACGCTATGCGGCAGATGAGCAGCGATGAGGTGGGACACGATGAGTATACCACACAGAGGCTGCTTAAGAGACATCGCGTCCTGAGAGATGAGGCAGCTAAGAACGGAGCTACCATTGACACTTTGAGCAAACAGGCCAATTCACTGCCTGAAGAGCTCAAGAACACCCCAGACATCCAAAGGCGTCTGAAGGACATCAAGGATCTGTACATGGAGCTGCTGTCTCTCTCAGACCTGCGGCAGAAAAAGCTGGATGACACCATGGCGCTCTACACCATCTTCAGTGAGACGGATGCTTGTGAGCTCTGGATGGGTCAGAAGGAGACATGGTTGGTGGGCCTGGAGACTCCAGAGAAGTTAGAAGATCTGGAGGTGGTTCAGAATAGGTTAAGCATTCTTGCTCAGGAAATGGGAAATTTGCAAGCAAGAGTAGACGACGTCAACAAAGCAGCCAAACAACTAGAGGACAGCAGACACCCACGATCAAAGGAGGTGAAGGACTGTCAGACCCGTCTCAATAAGAGGTGGGAAGCATTTAAGGCAATGGTAGAAGATAAAAAGCATAAGGTAGATTCAGCGGTCAGTCTTCACAACTATGGGCTTGACTGTGATGAGACGGGGGCATGGATCAAGGACAAGACACGAGTTATTGAATCCACACAAGAACTTGGAAATGACCTGGCCGCAGTGATGACCATCCAGAGGAAGCTGTTTGGAATGGAAAGAGACCTGGCTGCCATTCAGGATAAGCTAGACTTCCTGCGTGGTGAGGCCCAAAAGCTGGTGAAGGATCACCCAGAAAATGCTGCTGACATCCTGGCTCGACAAGACGAGCTGGACGCAGCTTGGGACACTCTGAAGCAAACGCTAAAGGCCAGGGAGGAATCCCTGGGTGAAGTCAGCAAGCTCCAGACCTTCTTGCAGGATATGGATGACTTCCAGTCCTGGCTGTTTAAGACCCAGAAGGCCATTGCCTCTGAGGAGATGCCAACAAGTCTTCCAGAGGCGGAGGAGCTCCTGAGCCTCCACGATGCAGTAAAAGGAGACATGGATGGTCATGAAGAAGACTACCACCGTGTAAGAGACACCGGAGTAGTTGTAACTCAAGGCCAAGAAGACGATCCTCAGtatcagcagctggagcagaGGCTAAAGGGCCTGGACAAGGGCTGGGATGAGCTGCACAAAATGTGGGACAGCCGTAAGAACTTTCTGGACCAGGGTCTAGGCTTCCAGCAGTTTTCCAGAGATGCAAAGCAAGCTGAAACCATCCTAAACAATCAGgaGTACACTCTAGCCCACTTGGACCTGCCTGACACTTTGGATGGAGCGGAGAAGGCCCTCAAGAAACATGAAGATTTTGTTATCACCATTGACGCTAATAAGGACAAAATACAGACTACGCTGGAAGGAGGTCAGAGGCTAGTGGACAGTGAAAACCTGTACGCACCGAAAGTGAAGGACAGGATGAACTCCATCCAAGACAGATGCGAGAAGAACCAAGACAAGGCAAAGGAAGTCTCAGGAAAACTCAAAGACAACCGAGACCTGCAGCACTTTCTGCAGAACACTCAGGATCTTACTCTATGGATAAACGAGAAGATGCTGACTGCTCAGGACACCTCATACGATGAGGCACGCAACCTCCACAGCAAATGGCAGAAACACCAGGCCTTCATGGCTGAGCTGGCCTCCAACAAGGACTGGCTCAACAAAATCGATCAGGAAGGTGAAGAGTTGATGGAGTCCAAGCCGGAATTTGAGCCCATTGTGATGGAACGTCTGGCTAAACTTCACGAACTGTGGGATAAGCTGGAACAGACCACACAAGAAAAGGCCCGACTTCTGTTTGATGCCAACCGCTCTGAGCTGTTTGACCAGAGCTTGGCTGATTTGAAGAAGTGGCTTGCTaacctgcagctgcagctccagggCGACGTGGATGAGGAGGTTAAAGATCTCACCAGTGCCAATATCTTGCTCAAGAAGCATCAGATGACTGAGAATCAGGTGAGGGATCGAGCTCGGgagctggaggagctgcaggaggCCGTTCAGCAACATGGCCCCATCAGAGAAGATCAGCCTGAGCTGGAGGTGGAGCAGCAGGCCCTCCAGAGAGACTTCCAGCAGCTTCTCACACCCCTGGCTCAACGCAAAGGCAAACTGGAGGCAGCGAAATCTGTGTACCAGTTCTACAGAGACATCGCCGATGAAATTcTTTGGGTTGAAGAAAGACTGCCTATGGCCAAGTCACAAGAACATGGAAACAATCTTCAAACAGTCCAGCTTCTCCTGAAGAAAATGCAGACTCTTCAGAAGGAGATTGAAGGTCACCAGCCACGTGTTGATGAGGTACTGGAGCGCGGTCGGCGTATGATGGCAGCTGCAGCGGGAACTCCAGAGGCGGACCACATGTCTGAAGAAATGAAGAAGTTGGAGGAAGTGTGGGCACAGTTGCAGGACGAGATGGAAAAGCGAAGGGATCGGCTCAATGGATCAAATGAAGCTCAGCAATACTACAATGATGCAGATGAAGCTGAAGCTTGGATTGGTGAGCAGGAGCTCTACATGATTGCTGATGAGAAAGCAAAGGATGAACAGAGTGCGATGGTCCTGCTAAAACGACACTTGATTCTGAAGCAAACAGTGGATGACTACGCAGACTCCGTTCAGAAGCTGGCTGACCGCGCTCAGAAGACGCTGGCTGAGGATCATCCTGATGGTGAGGCGATCATCAGAAGGCAGGGTCAGGTGGACAAGCAGTATGCAGGGCTTAAAGAACTGGCAGAGGATCGCAGAAAGAACCTCGACCACACCTATCATCACTACCTGCTGAGCCGGGAGGTGGAGGATCTGGAGCAGTGGATTGCTGAGCGTGATGTGGTGGCTTCATCACAGGAGATGGGCCAGGACCTTGACCATGTCACGATGCTGCGGGATAAGTTCAGAGATTTTGCGAGGGATACGGGGACTGTGGGACAGGAGCGGGTGGATGCTGTGAATCAGATCATTGATGAGCTGATAGAAGGCGGCCACAGTGAATCAGTTACTCTGGCTGAATGGAAGGATGGAGTCAACGAAAGCTGGGCTGATCTCCTGGAACTCATCGACACCCGTAACCAGCTCCTCACATCTTCTTACGACCTTCTCAAGTACTTTGATGATGGGAAGGAGTTGGTGGTACAGATCGAAGACAAACAGAAGGAGCTTCCAGAAGATCTGGGAGAGGATTTCAGCAAGGCAGAGTCCTTCCACCGCATGCACGCTGCCTTCGAGAGAGACATCAGCACCCTGGGCAAGCAGGTAAAACAGTTCCAGGAGACAGCAGCTCGTCTGTTTGCTCAGTACGCTGGGGACCAGGCTGTTGCCATCCAGACCACAGAGAAGGAGGTGGTAGATGCCTGGAAGGGTCTCCTTGCTGCCTGTGCTGGAAGACGGCAACAGCTGGAGGAGACGGCCAGCAAGTTCCGATTCTACACCATGGTTAGGGACCTTTTGGCCTGGATGGAGAGTATTATCCAGCAGATAGAAACCCAGGAGAAGCCCAGGGATGTGTCATCAGTAGAGCTACTGATGAAGTATCACCAAgggatccgtgcagagattgagacACGTGAGACCAAATTCAATGCTTGTGTGGAGCTGGGAAGAACTCTGTTGGTACGGAAGCACAAAGACTCAGAGGAGATCAAAGAGAAGCTCAGGCAGCTGATAGAGAAGAGGAAAGAAATGATGCTGAAGTGGGATGACCGATGGGATTGGCTTAGACTGTTGTTGGAGGTGTGCCAGTTTGCTCGGGACGCATCTGTGGCAGAGGCCTGGCTGATAGCTCAGGAACCTTATGTGGCCAGTAAAGACATAGGTCAGACTGTGGATGAGGTGGAAAAGCTCCTCAAAAGACACGAGGCCTTCGAGAAGTCCACCGCCACCTGGGAGGAGCGATTCTCTGCACTGGAGCGCCTTACAACACTTGAGCTGCTTGAgatcagacagcagcagcaacaaatTCAGCAGTTTATTCAGGAACAGGAAAAGGacagcagGAAGGAAGACACAGGCTTTGCAGAGGAGTCCTCACAACTTTACACAGTAGAGGAGCAGACTGTGtctGGCATGGCAGCAGTAGAGCCCAGCTCAGGTCATGGGGATGGCACTGCAGGGGATTCGACGGTGCCCATCATTTCTGAAATTCAGGACAGCGGCTCTATGGATCTAGACGCTTCCACGTCAGTCCAGGTCACCAAAGAGGCAGAGCGGGCTGCCACTCTGCCTGTGGAGCCTCCACGACCTCAGACGACCCTGCTGGAGGGAACTCTAGCCCGGAAACATGAGATGGAGGGACCTAACAAAAAGGCGTCTAACAGGTCCTGGAACAACATCTACTGTGTGTTAAAACCTGGGCAGCTCTCGGCCTACAAGGATGCCAAGAGCTTGGGACATGGCGTCACTTATCATGGTGAAGATCCACTGTCACTAAGCAACGCATCATGTGAGGTGTTGACCAGttacaagaaaaagaaacaggtcTTTAAACTCCGGCTTGGTGATGGCAGTGAGTACCTGTTCCAGTGTAAAGATgagGATGAGCTACAGACATGGACTCAGGCCATAGAGAAGGCAGCACAGCCTGATGTAGAGGAACCAGTAGCAGGACCCTCAGGGCCTCGAGCCCGGAGCCTACCACCGCAATCCTCCTCCACCCTCCCAGAAGCCCCCTCAACCAAGAAGGACAAGGAGAAGAGGTTCAGTTTATTCACCAAGAAGAAGTGAGGGCAGCTCAGAAGTCCAGGACCTCACAGtggacactcacacacacacactcactcatggGACACAGTGGGCAGATGGGGAAATGAAGAAATTTATATTACCGTACTccctttttttctacattatattAATTTGTATGATTGAGAATGACACGCTTGCTTGTATGTACGCCACTGGACTGTTGCAAAGGTCCACctgtgttctttattttttactttatttaacccCTAAAATAGAGCATATTCACAGTGTATCCAAATAAAACCACCAGAAGGCTGTTATCACACTCAA

Function

GO:

id name namespace
GO:0048821 erythrocyte development biological_process
GO:0035162 embryonic hemopoiesis biological_process
GO:0008091 spectrin cellular_component
GO:0005543 phospholipid binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110609 lncRNA upstream 130339 21024135 ~ 21025804 (+) True G82091
TU110608 lncRNA upstream 132285 21023004 ~ 21023858 (+) True G82090
TU110606 lncRNA upstream 133571 21022070 ~ 21022572 (+) True G82088
TU110607 lncRNA upstream 136281 21019092 ~ 21019862 (+) True G82089
TU110591 lncRNA upstream 207701 20947596 ~ 20948442 (+) True G82073
TU110743 lncRNA downstream 201894 21391162 ~ 21394714 (+) True G82193
TU110744 lncRNA downstream 201894 21391162 ~ 21420420 (+) False G82193
TU110745 lncRNA downstream 209418 21398686 ~ 21399884 (+) True G82194
TU110801 lncRNA downstream 298744 21488012 ~ 21488214 (+) True G82234
XR_002650347.1 lncRNA downstream 302433 21491701 ~ 21506791 (+) True LOC111193214
XM_022672918.1 mRNA upstream 19236 21081464 ~ 21136907 (+) True stard9
XM_007252549.3 mRNA upstream 76521 21060695 ~ 21079622 (+) True cdan1
XM_007252553.3 mRNA upstream 196752 20941708 ~ 20959391 (+) False mbip
XM_007252552.3 mRNA upstream 196752 20941709 ~ 20959391 (+) True mbip
XM_007252551.3 mRNA upstream 230475 20921537 ~ 20925668 (+) True LOC103043023
XM_022672922.1 mRNA downstream 5440 21194708 ~ 21279138 (+) True LOC103041063
XM_007252545.3 mRNA downstream 5441 21194709 ~ 21279138 (+) False LOC103041063
XM_007252546.2 mRNA downstream 93335 21282603 ~ 21296256 (+) True gpr68
XM_022672931.1 mRNA downstream 331639 21520907 ~ 21672140 (+) True ralgapa2
XM_022672936.1 mRNA downstream 724958 21914226 ~ 21926373 (+) True tmem87a
TU110179 other upstream 1482505 19673127 ~ 19673638 (+) True G81763
TU110177 other upstream 1490096 19665736 ~ 19666047 (+) True G81761
TU110107 other upstream 2225389 18930238 ~ 18930754 (+) True G81704
XR_002650340.1 other upstream 2635196 18511622 ~ 18520947 (+) False LOC103033848
TU109877 other upstream 2692047 18460130 ~ 18464096 (+) False LOC103035760
TU111179 other downstream 1168376 22357644 ~ 22358135 (+) True G82488
TU111323 other downstream 2041162 23230430 ~ 23231318 (+) True G82609
TU111569 other downstream 2686171 23875439 ~ 23877767 (+) False timm9
TU111570 other downstream 2686171 23875439 ~ 23877767 (+) True timm9
TU111581 other downstream 2720414 23909682 ~ 23920698 (+) True G82811

Expression Profile