RNA id: XM_022672936.1


Basic Information

Item Value
RNA id XM_022672936.1
length 2741
RNA type mRNA
GC content 0.42
exon number 20
gene id tmem87a
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 21914226 ~ 21926373 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cctgTGTTGTGTCGTGCTGGTGGGTGGCACTTGCcggctgtgtttgtgtgaaaatgACATATGCTcgtgtgtttctgtctgttttattcTTATGGAGGTCATGCTGCGCGCTCGGGGCGGAGGTTTCCCTGTGGAATGTAGATGTTTCCACGCAAAAAGAAATTGTGCTTCGCAAGACCTTGTATGCCAACACCACAATCTTCATTAAATTTCAGGGACATGTGGCGGCATGTGAAGAGAAGAAAATGGCCTTTAATGTGAGCTGGTACCTGCGTTCCTCCATCTGCTATAATGAAGTCTTCAACACCCCAGATAATACAGCTTTGACCATGTTTGGAATGGATCAGAGAGCAAGGGATGACTGGCCTGGCTTCTACAGCCAGGGCTACATCTATTTTGAAAACTGCTCATCTCTGTTCACACCAAAGgtttaTTATAAAGAGTTTCAGCCAATTCTTCCTCTCGTCAGTTCAACATCTCAAGAGGACAAAGCCACAAACCAAACAGGAAATGTGTGGGATAGCAAACCGGATGTTGGAGCAGTTGCTCAGTCATGGTCGAACAGCCCCTACATGTTTATTCTGAAATTTCAACAAGAACCGCAACCTGATGCCAGTAGAGGGCGTAGAGAGGCAGAGGACAAGAACTTATCCAGTGATTTAGACAACCATTTATCAATTACAAtGACTGTAGAAATGAAGCGTCATAATGACTATTCCTCACCTGCTGATTGGCCTCTAATGACTTTCTTCATGGTCATGTGCATCGTGTATGTGCTGTTTGGTGCTCTGTGGCTCCTCTGGCTGATCTGTTATTGGAGAGACCTCCTCAGGATCCAGTTCTGGATCGGTGCTGTCATCATCCTGGGCATGCTGGAGAAAGCTGTCTTCTACTCTGAGTACCAGAGCATCCGATACCAAGGAGACTATGaccacaatGCTGTTATCTTTGCTGAGCTGCTGTCTGCACTGAAGAGATCCCTGGCTCGAATATTGGTGATCATAGTCAGTCTGGGCTATGGCATTGTCAGACCAAGGCTGGGGACTACAGTGCCCAGGCTGGTGGCGGTAGGCCTGCTGTATCTCATCTTCTCCTCTGTAGAGGGGGTTCTCAGGGTAACAGGGGGTTTCTATGGCACTGTGGCTCTCGTCGCtaatctcagtctctctcttatTGATTCCTGCGTCATGTGGTACATTTTCATCAGTTTGTCTCAGACTACTCGCCTTCTGAAGCTTCGCAGAAATGTGGTGAAGCTCTCCTTATATCAGCACTTTACCAACACCCTCATATTCTCTGTGCTGGCATCTATCATTTTCATCGTATGGACCACCAAGCAGTTCAAGATTGTGGAGTGTCAGAGAGCTTGGAGAGAACTGTGGGTGGATGATGCTTTCTGGAGGTTGCTGTTCTCCACCATCTTGCTGGTGATTATGGTGCTACTGCGGCCCTCTGTCAATAGCCAAAGATTTTCCCATTCGCCCCTTATTGATGAGgaagatgatgaggatgatgaagcGAAGGAACCTATGCTTAATGAAGCATTTGAGGGAATGAAAATGAGAGGAGCAAAGTCAGACACACACGCAAGTCAAAAACTACTCGGCAAAGAGAGCTCCCAAGATGATGACCTGAAATGGGTGGAAGATAACATTCCTACAACTGTAGTCGATGTAGCTTTGCCTGTGGTGTTGGATGACGAAGAGGAAATTCTAAACACCAGGATGGAGAGATCCAAAATGGAGTAGGCTTCATGCAGGTGCATAAAAGCAAGATATTTATTTCTCCAGTGCAGCTGAGAACTTATAAAGTGATGATAAATGTCACTCAGTTGAAACCCTTGGTTGGAGTACTGTGTTTTCATTTGAGACAGTTTCTGGTCTGGGGCAAAGTGTGGAAATATGTCTCAGGCTCAATGTGAAATCTGTCAATCTTCTTTGCCAtttcttattgtttttgttgGGTATTTTGCTGGGATTCTATTTGTGCAACTTTtcttatttaagtatttttgtgCTTTCTTAAAGCATGTGGACAGATTTAATTTTGACTCAATACCATCCAATCCTTTTTAATAACCTAATCAGTACTTATACCTTAATGTCATTACCAGTTCCTAAACAATACTTTTTCCAATATCTTGTTTCAAATTACAAACAGAAAGTGGATGTGGCTTAAAACTGCAAGAATGTACAAACAGATTGTATGTTAGGCAATCTGCAGTTATATTTGGTAACATGTGGACTAATTGGTTCAGTGCTGTTGATTACATTCGTTTCTTAGGTATTCAAGTTTGGCATTGCCAATACTCTCTCAAGTATTGATATTGTTCAGTCCGTGCCATGAAAGTATCTAACTACGATAACCAATCCTAGGTTTGacttttcatcttttttatGCCTGATTAGAAGGCAGATTGCATAACATTTGGCTATGGGTGTCTACAGTTGGGTTCAATTATTTTGGGAAAGAATTTGACACAGCTTGTCTTTTTTGTGTATAAGATCACTtgaaattacacatttattaagcatttaattatatgcatatatttatgttttaaagttAATCATTCTTACATAAAAGATTTGTggaaagatatattttttgtacatcAAATGCTTGTTagcttgtttcttttttaattgcCTTAGCTTTACTGGTGACATGGGAAGGGGGTGTTGTGTTTGTCTCTGTTGAGGTTTggctgaaaaataataaaatttactttgactttttaa

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110979 lncRNA upstream 33224 21880537 ~ 21881002 (+) True G82336
TU110993 lncRNA upstream 35485 21878055 ~ 21878741 (+) True G82349
TU110989 lncRNA upstream 44332 21868379 ~ 21869894 (+) True G82345
TU110952 lncRNA upstream 125286 21787174 ~ 21788940 (+) True G82311
TU110891 lncRNA upstream 192848 21720629 ~ 21721378 (+) False G82270
TU111046 lncRNA downstream 148169 22074542 ~ 22079050 (+) True G82383
TU111124 lncRNA downstream 212123 22138496 ~ 22141716 (+) True G82438
TU111156 lncRNA downstream 308130 22234503 ~ 22234891 (+) True G82465
TU111167 lncRNA downstream 358690 22285063 ~ 22285341 (+) True G82476
TU111178 lncRNA downstream 429268 22355641 ~ 22356086 (+) True G82487
XM_022672931.1 mRNA upstream 242086 21520907 ~ 21672140 (+) True ralgapa2
XM_007252546.2 mRNA upstream 617970 21282603 ~ 21296256 (+) True gpr68
XM_022672922.1 mRNA upstream 635088 21194708 ~ 21279138 (+) True LOC103041063
XM_007252545.3 mRNA upstream 635088 21194709 ~ 21279138 (+) False LOC103041063
XM_022672919.1 mRNA upstream 724958 21141773 ~ 21189268 (+) True LOC103047712
XM_007253814.3 mRNA downstream 1193 21927566 ~ 21948191 (+) True vps39
XM_007253813.3 mRNA downstream 29635 21956008 ~ 21994947 (+) True galnt16
XM_007253808.3 mRNA downstream 74240 22000613 ~ 22046430 (+) False numb
XM_022672937.1 mRNA downstream 74241 22000614 ~ 22046430 (+) True numb
XM_007253806.3 mRNA downstream 74241 22000614 ~ 22046430 (+) False numb
TU110179 other upstream 2240588 19673127 ~ 19673638 (+) True G81763
TU110177 other upstream 2248179 19665736 ~ 19666047 (+) True G81761
TU110107 other upstream 2983472 18930238 ~ 18930754 (+) True G81704
XR_002650340.1 other upstream 3393279 18511622 ~ 18520947 (+) False LOC103033848
TU109877 other upstream 3450130 18460130 ~ 18464096 (+) False LOC103035760
TU111179 other downstream 431271 22357644 ~ 22358135 (+) True G82488
TU111323 other downstream 1304057 23230430 ~ 23231318 (+) True G82609
TU111569 other downstream 1949066 23875439 ~ 23877767 (+) False timm9
TU111570 other downstream 1949066 23875439 ~ 23877767 (+) True timm9
TU111581 other downstream 1983309 23909682 ~ 23920698 (+) True G82811

Expression Profile