RNA id: XM_022672987.1


Basic Information

Item Value
RNA id XM_022672987.1
length 1488
RNA type mRNA
GC content 0.42
exon number 3
gene id LOC111193225
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 24403690 ~ 24407033 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAAGTCCAGGTGTGCAAAAATACAActggggcgcaaaaataccaggtgaaaaaaattaaccagcgtgttttaacgtTTGTAAAATTAACTTCTcctgagcacaaatgtgaaactaacaAGAAACAAAAAGGTAATCATGTGCGCGCTGAAGAAAATTTTGCTtttgagcttcatttttctcttcTCAGGTTCTTTTTTCCTCGGGCGATGTGTGACTTATCTGTAGTAGTTTGTGCTCGACTGAGTTttttgcgctcgagttttgaaaggggtggtttttacagtttgggggcggggccgGGGTCACCTTCCTCAGCGAACcttattggctgatatctccagggtttgtgacggaccgcctacctccacgagccggaggagggcggGGACAGAAGAaaggcaggagagttagctaactggctatgctaacatccaaacaaccggCTCTCCAGCACTTAGCTTGTGTTTAGTGCCCGGTTTAGAAACTAGACCGGTCTGGATTAGGGAAAGCAGCATGAATAAAGAAAGGTAACGCAGGCGTTTATGTTGACTTGCTGTAACTTATTGGAATCACTTTTGACAGAAAATGTCAGGTGGCTCAAAATCAGGATCAGTTACAGAACATCTGTTTAAAATACTGGTGATTGGAGATTCAGGTGTTGGAAAGACAAGTTTTGTTAACCGCTATGTTAAGAATCATTTCTCAAGTCACCTGAAATTAACGCTCGGAGTGGATTTCTCTATGAAGGTCATTGACTGGGACAGTAAGACGCTGGTGAGATTACAGCTGTGGGATATATCAGGtcatgaacattttaaaaatatgagcAGAGCGTATTTCAAAGGAGCAAGAGGTGCGCTTGTTGTGTATGACGTGACAAAAGAATCAACGCTGGAGGGAGCCCTGAGCTGGAAACTTGAACTTGACCACAAAGTTGTGACGGATAAAGGTCGTCCAATTCCTTCTGTTCTACTTGCAAATAAATGTGACCGTAGCAAAGTGTGCTCAAATGAACCCTGTCATATCGACAGACTGTGCAGAGAGAAGGGCTTTACTGGATGGTTTGAAGTGTCAGCCACGGAGAGCATTAATGTGGATGAAGCTGCTAATTTCCTTGTGAAGAATATTTTGCTGTGTGAGGCGTCAAACGCAGAGAAAGACCAGCGTGGGAACATAACACTGAAACAAACTCCTGAAAAAAGACTCTTTAACTGCTGTTAATTACACAAGCCTGGAAGTTTcagaaattaataaagaaaatgaggaATGTGTGACAATTCATTATGGCAACACAGATATTACCTTTAATAATTGATCAGTCATAACATTCGTACCATTGATTAGATGTGAGAAACTTTGAATATCTTTATCTACAGTGTAGTCTGACAAGCAGTGTGATGAATTAGGCAGCAAGTTGAGGTTAAATTGCAAGGTACACACACTCAATAGTCACACCTCAGGACGTGCAATGTCTTGTGCAAAGTTAA

Function

GO:

id name namespace
GO:0060036 notochord cell vacuolation biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650357.1 lncRNA upstream 35717 24356975 ~ 24367973 (+) True LOC111193226
TU111933 lncRNA upstream 53155 24349529 ~ 24350535 (+) False G83071
TU111934 lncRNA upstream 53213 24349441 ~ 24350477 (+) True G83071
TU111920 lncRNA upstream 88725 24314715 ~ 24314965 (+) True G83064
TU111624 lncRNA upstream 264786 24136576 ~ 24138904 (+) True G82838
XR_002650358.1 lncRNA downstream 165295 24572328 ~ 24576551 (+) True LOC111193227
TU111994 lncRNA downstream 212662 24619695 ~ 24619937 (+) True G83116
TU111998 lncRNA downstream 223840 24630873 ~ 24635198 (+) True G83120
TU112002 lncRNA downstream 229573 24636606 ~ 24636882 (+) True G83121
TU112004 lncRNA downstream 235359 24642392 ~ 24642655 (+) True G83123
XM_007251966.3 mRNA upstream 99 24383878 ~ 24403591 (+) True LOC103047809
XM_015606503.2 mRNA upstream 67461 24317310 ~ 24336229 (+) True LOC103045057
XM_022672986.1 mRNA upstream 67461 24317310 ~ 24336229 (+) False LOC103045057
XM_007251961.3 mRNA upstream 100924 24299171 ~ 24302766 (+) True stx11
XM_007251958.3 mRNA upstream 128582 24271342 ~ 24275108 (+) True LOC103045657
XM_022672988.1 mRNA downstream 10976 24418009 ~ 24458899 (+) True LOC103021971
XM_022672989.1 mRNA downstream 10976 24418009 ~ 24458899 (+) False LOC103021971
XM_015606532.2 mRNA downstream 10976 24418009 ~ 24458899 (+) False LOC103021971
XM_022672991.1 mRNA downstream 10976 24418009 ~ 24458899 (+) False LOC103021971
XM_022672994.1 mRNA downstream 10976 24418009 ~ 24458899 (+) False LOC103021971
trnal-uaa_4 other upstream 93195 24310413 ~ 24310495 (+) True trnal-uaa_4
trnal-uaa_3 other upstream 94800 24308808 ~ 24308890 (+) True trnal-uaa_3
trnal-uaa_2 other upstream 96257 24307351 ~ 24307433 (+) True trnal-uaa_2
trnal-uaa_1 other upstream 96997 24306611 ~ 24306693 (+) True trnal-uaa_1
TU111651 other upstream 261458 24139389 ~ 24142232 (+) True G82853
trnal-cag_10 other downstream 420641 24827674 ~ 24827756 (+) True trnal-cag_10
TU112274 other downstream 528040 24935073 ~ 24935550 (+) False LOC111193228
TU112312 other downstream 623004 25030037 ~ 25034121 (+) False c9h8orf74
XR_002650360.1 other downstream 1512524 25919557 ~ 25972243 (+) False LOC103033015
TU112640 other downstream 1828465 26235498 ~ 26249096 (+) False G83602

Expression Profile