RNA id: XM_022673007.1


Basic Information

Item Value
RNA id XM_022673007.1
length 5143
RNA type mRNA
GC content 0.39
exon number 3
gene id LOC103027511
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 24673440 ~ 24679240 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGGTTGAGTACAATGGAGGACAGTCCTGAAGATTTGAAGAGTACTTACCAAGGGCTACACAGTGACTTTTCCAATCCGTTTGAAGGGCACTCTGTACTTAACGAACACTTGTTCACAATTGGAACTGTTGTTGAAGTTAATGTGTCTTATGTAGAAAGTGACCAAACATTTTGGTGCCAAATGGctgacagtgtgccaagtctcAAGATGCTAATGGAAGATCTGCAAAGACATTATTCATGCAGTCAGTTCCAGATGCTCATTGGATCAATTTGTGTGGCATGTCATCCCAATAATGGAATGTGGTACAGAGCACACGTTTTAAACCACCAGCTGAATTCGTCTCAAGTTGATGTACGCCTCATTGATTATGGCCAACGGCTGAAAGTGCCGTTGCAAGATTTGCGACCAATTGACTCAGAATTTCTTAAGCTAAAACGTCAAGCTTTTCAGTGCAGCCTGTTCAACAAGGTGAACTCTGTAAGTTCTGAAGATACAGCTTTAAGTGATAGTGCCTTTTCTGACTCATTTGACTTAATTTCTTCAGCATCACTTGATAATGCCACTTTGAAATTCACTATATGTGCAGTTATGTATGACCCACAAGGTACAATGCTCAATGTGGTGGATATTGAATCACTGTCCCCAAATTGTAGGACTGCACTCATTCAGAAAGAAGCAAATAGCTCAGCAGTGGACTCTCTTGACACACATTGTGTTCTGAATTCTCCACAAGCAGACTCATCCCACCATATTAACCTACACACAAAAGAAAAGGTTTGGATAACCTGTGTTAAAGGTGTTGACCACTTCTATGGCCAGTTTAAACCGAATGCTGCCATGGTTGAAAAACTGACCAAAGACATTCAACAGTTTTGTGGAATGACTCATCCCAAAGGAAATAATTTTTTACCACAAATGATGTGTATTGCAAGATATAAGGATGGCCAGTTGTACAGAGGACAAATAAAATCAGTAAATCCCAAAATCATTGTCCATTTTGTAGATTATGGTGATCTTTTGATTTTAGATGAATCTGATCTTCTGCCTTTTCCTGCTGAGCCCAGTGCAAACATGTCTCTCCCATTTCAGGCTGTCAAGTTTAGCCTTTTCAATGTAAGTTTAGAAGAATCAACAACAGAATTGAATGCCTGGTTTGAAAGTTATGCAACTGACCGTATGTTCACTGCCACCATAATGGGGAAAGGCCCTAATGGGGAATTATTAGTGGAGATGCATGATggcaaaacaaacataaatgtgAAGGCAAAGGAGAAATGGAATGAAATCCAAAACAAGGAGTGTAATGCAAGAATACAAGACATCAACCAGCTCTCACACGGACTTGTAAAGCCTTTGGGGAGAAGAGACAACTCTAACTCAAATCTTCAAGCAGACCAAGGTTATAGAAAAGCACAAAAATCAGCTGACCACACCAGTTTTACAGGccataatgttaaaaatgtgcAATGTACTGATTTTGCAGTTTGTGCAAGTGGACCCATTGTATCTCTGAAAATGGAAAAGCAAAAAGATAATGAGAAGCCTGTTCCTTCTTACTCAAAACTGAAAGACCTTCCTTCAAGAATTATGAATGCAGGATGTGTCTCAGAAGGCTATATTTCACACTGCAACAGCCCATCAAGTTTTTTTGTTCAGCTTGCATGTGAAGACTCTGATATTTTTTCTCTTGTGGACAAACTGAATTGTTCTCAGTTATGTGAATCACAAGTTGAATACAGTCAGTTGATGCCAGGTCATTTGGTGAAAGCACAGTACCCCTCTGATGGTGCTTGGTACAGGGCAGTTGTTAAAAACAAGCTAGATAATTGCACAATTCTCGTGGAATTTATTGACTATGGAAATGAGGCCATACTTTCTGCTTCGAAAGTGAGACAGTTAGACATGCAATTCCTCAAATTCCCTAGATATAGTATTCATTGTTGCATTAATGTAGGTAatgctgaaagaaaaaaagaatggacAGAAGAACAGatggacatttttaaaaatgtcattgTTGCAAATGGTGAGAGAAAACTGCGTTGCAACTTTATTGAAGAGAAAGAATCGGTTTGGCAAGTTGGTATACAAGACCAGTCTTTATTAAATCTGGAGAGCACTCTTGAATTAAAATCTTGCAATACATCAACAACTGTCTGCTCTAGAGGAGTCTGTCCAGGTGTGTACAAGAAACCTGATGTTTCCTTGGGTCAGACAATTAAAGCATATGCCTCATCTGTTGTAGATCCAAATTTCTTCTGGTGCCAGTTTGCAGACTCTGAAAAGCTTGACAAAATCTCTTCAATTGCTCAAGAAACTGGACATTCTGCACAAACAAATCGAGTATTGTTAGATCATTTGAGTCAAGGAGACTCATGCTTAGCTCTTTTCCCAGATGACAACTTGTGGTACCGTGCACAGGTTATTAATAAATCTGtgagttctgtctctgtgctttTTGTAGATTATGGAAATGAAAGTGAACTTGACCAAACATCAGTGAGATCAGTACCTGCTAGCCTACTGGAAATCCCACCACAAGCATTTCTCTGTCAGGTGGAAGGATTTAAAGCTGTAGATGGATGTTGGAATGAGGCTGCCTCAGGTAGATTTACTGAACTCCTCGTGGACAAGCCTCTCAATGTTATCATTCAAAATGTGAAGATGGCATCAGATCTACCTTTTTGTCATCAGTATTCTGTCCAAATTGAGTGCAATAAGGTCTGTATCAGTGACCTCATGAAAGATTACTGGAATGACTCCACTGCTAATATCTACGGACAAATGACTGAAGAGGTTTTTCTGAAACCAATGACAGTGACTGATGTTGATGTCCTGAGTCCTACATCTGTTAATAAGACGTGGGATACTACTGTGACTTCTGTTCCTTCAGTAAAGTGTGTCCCTAAAGTTACAGACCTGCCCCCTACCACCTTTGAACAAGATTGTGTTTCAGAAGTTTACATTTCACACATTATTAGCCCCAACAGTTTCTTTGTGCAGTTAGCAAAAGATGAAAATGGTCTAGTTTCACTCACAGAAGAGTTAAATTCCATTTCTTCATCAGTTAATAATCAAGCCCAAATGAATTATTTTCCGCATGGAAGTTTGGTGAAGGCTGTTTTTCCTGATGATAACTCCTGGTACCGTGCAGTCATCAAAGAAACAAATGGGAAGGACATCCATGTTGAGTTCATAGACTTTGGAAATGAGGCAACTGTTCCTGCCACAAGTGTACGCAAGCTTGAAGAGCAGTTTTTACAGGTTCCAAGGTTCAGTATTCATTGCTCTCTCAAGAGAGATCATCCTACAGGAATACTTATAGGAATGGAGAAAGAGGCATGTCCACTGGCTGCTGTGCTCAAGAAGGCTGGTGAAAAAAGACTGTTTTGTAAGTTTatcaaaaagaacaaaacagtTTGGGAGGTTAACCTTGCAGATCAAAGGAGCACATTAGATGGCCTTCCTCTTGAAATATGGGATGATTTCAGTACACTACAGAATGATTCTCCAAAGCAAGACATGGCATTCAAGAAACCAGAAATTTCTGTAGGCCAGACAGTTGAGGCATATGCCTCGTCTATGGATGGGCCTAATTACTTTTGGTGCCAGGGTGCAAATTCTGAGGGACTTGACACAATCTCCCTGATTGCTCAAGAAGCTGGGAACTCTGCAGAGATCGCTTGTATTCAAATTGATGAGTTGTGCCAAGGAGACCCTTGCCTAGCCCTCTTCACTGACAAACTGTGGTACCGTGcaaaagttattaaaaaatcTCAAAAGAGTGTATCTGTATTGTTTGTGGATTATGGAAATGAGTCTGAAAATGAATCAGGCTCTGTCAAACCATTGCCCCTCAGTCTGCTGGAAAGACCACTTCAAGCTTTTCTGTGTCAATTGGAAGGATTCAGCCCATCAGGTGGGTCCTGGAATAGCAATGCTACTGACAAATTCTGGGAGCTTGTAGTGGATAAACCCCTGACATTGACTGTTACAAACATTCAGAACGATCTGGACAGTCCTTTCCCTTCGTATTGTGTAAAGGTCCAGTCCCAGGAATGTGTAGTAAATGAGCAGATGAAAAGTTTTTGGACTGCTGCTGTATGTCCTAATGATGAAAGCCCAAAATTGCCCCTGTCCAATGCAGACACTGTGCCTGTAGTTTGCAATGTCCAGTCTGTTCCTGAGAAAAGATTACATGAAATTTATGATAATTCTCAAGAAAACATCAAGACTTTAAGTGACTTTAAGCCTCAGTCTTTTTCACCTTttgaaaaacaagaacaagaagaaaCCTTCAGACAAATTGTTCACATAAAGGAAGAATGTGAAGAAATTGAGGTAACACAAAGAACTCTTGCTACCAGAGATGTCTGTCTCATTAATGGTGATGAATCGAGCCTTGCTTTGGATAAGTGTGTTTCAAAAAGCAAGGATGAGTTCAGAGGAATTAATGTCAAGTGCTCAAGCAAAAGTTTCCAAAACGGTCAACTGGATAACCTTTTGCCTTGTGTTGGAATGTCTGAAACTGCATCAAGCAATGAATATGATCAAACATTGGTCAATCAAGAAAATTCAGATGTTCCATATTCACAAGCTGATTTGGTAGGTTGCAAAGCAGAATTGGATGAGATGTTCCAAAAGATGGACGTATAACCTGTTGTAAACAGTACAGGAACTTCCCCTTGGCATTGGCTTATCAGTGAAGATATGATGGATTTTTTACTTGGTGTATCATGGTcttaaaaaaaacccaacatGTTACATTTAGAACATGTATGTTAATGTGCACTGTACAATGTAAATGTGTCCTATATCTATAGTATGTGGTCATTTGTGAAAGATTaaattctttttgtttttttgttttttttcttgacttGTCAAAATGATGAATGGATCGATTAAAAAATCTTTCTATGTAGTAgaatcttttttacattgattacGACTTAAAGTTAAGAGCTTTTTCCTTCTCATGTAATGCTGCTGTTTTGGAGGTACAGTGTATTTCTGTGGTTCTGACcatgtttaaatataattataactaACATCTCTACCAGTCATGATTTCAATGAATTTGTCATTTGTATTCATGTCGTTTGTatttctgtgaaaaataaagaCCTGTTTGCAGCAA

Function

GO: NA

KEGG:

id description
K18405 TDRD1_4_6_7; tudor domain-containing protein 1/4/6/7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112004 lncRNA upstream 30785 24642392 ~ 24642655 (+) True G83123
TU112002 lncRNA upstream 36558 24636606 ~ 24636882 (+) True G83121
TU111998 lncRNA upstream 38242 24630873 ~ 24635198 (+) True G83120
TU111994 lncRNA upstream 53503 24619695 ~ 24619937 (+) True G83116
XR_002650358.1 lncRNA upstream 96889 24572328 ~ 24576551 (+) True LOC111193227
TU112060 lncRNA downstream 92642 24771882 ~ 24772793 (+) True G83167
TU112074 lncRNA downstream 159290 24838530 ~ 24840128 (+) True G83180
TU112240 lncRNA downstream 214003 24893243 ~ 24893639 (+) True G83295
TU112242 lncRNA downstream 239185 24918425 ~ 24924815 (+) False ephx2
TU112264 lncRNA downstream 252679 24931919 ~ 24932539 (+) True G83307
XM_007251989.3 mRNA upstream 17348 24643690 ~ 24656092 (+) True LOC103027217
XM_022673002.1 mRNA upstream 82989 24576890 ~ 24590451 (+) True LOC103025610
XM_007251978.3 mRNA upstream 112741 24551942 ~ 24560699 (+) True LOC103024245
XM_022673001.1 mRNA upstream 121956 24460588 ~ 24551484 (+) False LOC103022677
XM_007287815.3 mRNA downstream 2946 24682186 ~ 24685860 (+) True ankrd66
XM_007251994.3 mRNA downstream 46978 24726218 ~ 24730018 (+) True LOC103029186
XM_007251997.3 mRNA downstream 52937 24732177 ~ 24736377 (+) True tp53i3
XM_007251998.3 mRNA downstream 57773 24737013 ~ 24742797 (+) True LOC103030357
XM_007251999.3 mRNA downstream 57780 24737020 ~ 24742797 (+) False LOC103030357
trnal-uaa_4 other upstream 362945 24310413 ~ 24310495 (+) True trnal-uaa_4
trnal-uaa_3 other upstream 364550 24308808 ~ 24308890 (+) True trnal-uaa_3
trnal-uaa_2 other upstream 366007 24307351 ~ 24307433 (+) True trnal-uaa_2
trnal-uaa_1 other upstream 366747 24306611 ~ 24306693 (+) True trnal-uaa_1
TU111651 other upstream 531208 24139389 ~ 24142232 (+) True G82853
trnal-cag_10 other downstream 148434 24827674 ~ 24827756 (+) True trnal-cag_10
TU112274 other downstream 255833 24935073 ~ 24935550 (+) False LOC111193228
TU112312 other downstream 350797 25030037 ~ 25034121 (+) False c9h8orf74
XR_002650360.1 other downstream 1240317 25919557 ~ 25972243 (+) False LOC103033015
TU112640 other downstream 1556258 26235498 ~ 26249096 (+) False G83602

Expression Profile