RNA id: XM_022673010.1


Basic Information

Item Value
RNA id XM_022673010.1
length 1516
RNA type mRNA
GC content 0.43
exon number 8
gene id LOC103045971
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 24742969 ~ 24747805 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGAAAGGAAAGCATGAGAAGCAGCATATGCCACTTCGCTGTCTggagatttttttaatgcaggacTGTCTAGTTAAAAATATTGAgggtattttattatattgtaggtttttattaatgtaatgatAATTGGAAATACTCTGTCCAGTGGAGAAATCGTGTTAAGTTATTTGGTAGTTCTTTTGGTACAAGGCGTTTAGTACTATAGCCATGGTGAATTTAGAAAAACTTTGTCTCACCAGACAGGAAAATAATCCATATTCTCCTGTTCAGAGTCTACCTGATGATTTAAAGGATGATTACCTATGCACTGAGTTTGAGGAAGGATGTGGGACCAGAGCAGCAGCTTTTCACTGCCATAACAGCAGAGCAGCCTGGGCCCAAAACGAGGAGAAATCGGGTGCTTGGAGGAAGCTGTTAATCACATCCATTTTGTGTTTGGTCTTTATGATTGGAGAAGTAATTGGTGGTTATGCTGCCCACAGTCTTGCTGTAATGACTGATGCTGCTCATCTTCTCACCGACTTTGGCAGCATCCTGATCAGCCTCTTCTCCCTGTGGATCTCCTCAAGACCTGCTTCCAAAACCATGACATATGGGTGGCATCGATCAGAGGTTCTGGGCGGTCTTTTGTCTGTGCTGTCCATTTGGGCTGTGACTGCTGTGCTGGTATTCATTGCCATTCAGAGGATCCTCCAAAATGACTACGAGATTCACAGCGGTGCCATGCTCATCACCTCGGGTTGTGCTGTCATAGTTAACATCTTAATGGCCCTAATTCTCCATCAGTCTCCAGCACATCATGGTCACAGCCATGGTCACAGTAACACCAGTGTGAGGGCTGCTTTCATCCATGTGGTGGGAGATTTGCTGCAGAGCCTGGGTGTTGCGCTAGCTGCCACAATCATCTACTTTTGGCCTGAATGGAAAATAGCGGATcctgtttgtacttttttattttccatactTATTCTCGCTACAACATCCACAATTCTGAAAGACATCTTCAAAATACTCATGGAAGGAACACCGCATGGAATAGACTTTGATTTTGTGAAAGAAGCTCTGCTCGCAGTCAGAGGCGTCAAATCTATACACAGTCTCCATCTCTGGGCGCTGACCATGAGCCAACCTCAGATATCTGTCCACACAGTGATTGATGAGCAGACCAGTCCACAGACTGTCCTCTTGGATCTGACAGAGATGCTCCAGTCTGATTTTAACTTCCACAACATCACCATTCAAATAGAGACATACTCAAATGATGCAGCTCACTGTAGAGAGTGCCAGGACCCCATTGACTGAACTACTGAAGTTGAAGGACAGACAGGACATCTACATTTCAACAATGAAGCTCCAACATTGTGTTTGTATGAACTGTATAACTTAACTTAAATGATGCAAAACATGGTGTTCAGAGCAGTTACCTTTCAGAGCTTGATTTTCAGTGCACCCGCTTTCTCTGCTAATTGTCAGTTTAGACTAATTTACACCAATAAAGAAGTTACATACATTAA

Function

GO:

id name namespace
GO:0071577 zinc ion transmembrane transport biological_process
GO:0072511 divalent inorganic cation transport biological_process
GO:0005385 zinc ion transmembrane transporter activity molecular_function

KEGG:

id description
K14689 SLC30A2, ZNT2; solute carrier family 30 (zinc transporter), member 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112004 lncRNA upstream 100314 24642392 ~ 24642655 (+) True G83123
TU112002 lncRNA upstream 106087 24636606 ~ 24636882 (+) True G83121
TU111998 lncRNA upstream 107771 24630873 ~ 24635198 (+) True G83120
TU111994 lncRNA upstream 123032 24619695 ~ 24619937 (+) True G83116
XR_002650358.1 lncRNA upstream 166418 24572328 ~ 24576551 (+) True LOC111193227
TU112060 lncRNA downstream 24077 24771882 ~ 24772793 (+) True G83167
TU112074 lncRNA downstream 90725 24838530 ~ 24840128 (+) True G83180
TU112240 lncRNA downstream 145438 24893243 ~ 24893639 (+) True G83295
TU112242 lncRNA downstream 170620 24918425 ~ 24924815 (+) False ephx2
TU112264 lncRNA downstream 184114 24931919 ~ 24932539 (+) True G83307
XM_007251998.3 mRNA upstream 172 24737013 ~ 24742797 (+) True LOC103030357
XM_007251999.3 mRNA upstream 172 24737020 ~ 24742797 (+) False LOC103030357
XM_007251997.3 mRNA upstream 6592 24732177 ~ 24736377 (+) True tp53i3
XM_007251994.3 mRNA upstream 12951 24726218 ~ 24730018 (+) True LOC103029186
XM_007287815.3 mRNA upstream 57109 24682186 ~ 24685860 (+) True ankrd66
XM_015606544.2 mRNA downstream 18176 24765981 ~ 24771053 (+) True fuca2
XM_007252008.3 mRNA downstream 25001 24772806 ~ 24793331 (+) True LOC103032669
XM_007252007.3 mRNA downstream 32863 24780668 ~ 24793331 (+) False LOC103032669
XM_022673015.1 mRNA downstream 32863 24780668 ~ 24793331 (+) False LOC103032669
XM_007252013.3 mRNA downstream 51227 24799032 ~ 24805385 (+) True LOC103034484
trnal-uaa_4 other upstream 432474 24310413 ~ 24310495 (+) True trnal-uaa_4
trnal-uaa_3 other upstream 434079 24308808 ~ 24308890 (+) True trnal-uaa_3
trnal-uaa_2 other upstream 435536 24307351 ~ 24307433 (+) True trnal-uaa_2
trnal-uaa_1 other upstream 436276 24306611 ~ 24306693 (+) True trnal-uaa_1
TU111651 other upstream 600737 24139389 ~ 24142232 (+) True G82853
trnal-cag_10 other downstream 79869 24827674 ~ 24827756 (+) True trnal-cag_10
TU112274 other downstream 187268 24935073 ~ 24935550 (+) False LOC111193228
TU112312 other downstream 282232 25030037 ~ 25034121 (+) False c9h8orf74
XR_002650360.1 other downstream 1171752 25919557 ~ 25972243 (+) False LOC103033015
TU112640 other downstream 1487693 26235498 ~ 26249096 (+) False G83602

Expression Profile