RNA id: XM_022673049.1


Basic Information

Item Value
RNA id XM_022673049.1
length 3130
RNA type mRNA
GC content 0.46
exon number 21
gene id mcm8
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 25667699 ~ 25683838 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCCTTCACCTAGAATAGCAGCACAGGACAGGAGCACAAATCACTCTGCCTTCAGATCACAAATGTCAAAGCAAGATGTTCCTGCCTGAAGCTGCACCATATGGGGATAGTGGACTACATTTTCTAAACATCGCGAGAGTGCAGATCCTGGACGCGCATGCGTGTTTCTGACAGTGGAAGTGTTTTGGTGCTACACGGCGCGAAATTCAGAAGCTGTTTCTTGGAGACAGGACTCGGAGTCCGAGTAGTAAATAAAGGAGCTGAGAAGAAGGCACAAGATGaatggacagggaactggaaaAAGTTCTTGGAGGGGTGGAGGCAGTTCTGGTTCATGGAGAGGTGGAGGCAGTTCCGGTTCATGGAGGGGTGGAGGCAGTTCTGGTTCATGGAGAGGTGGAGGCAGTTCCGGTTCATGGAGGGGTGGAAGCAGTTCTGGTTCATGGAGGGGTGGAAAGGGCCCAGATCAAGGTGGAGGGGCTGGATGGCGAGGAGGTGGCTGGAACGGAGGACGAGGTAGAGGCTGGAGGGGTCGTCCTTGGGGAAGAGGAGGAAGCAGTCACTCACACAATACACAGCGTGGTGCGGAATATGCTTCATCGGTTCCTCGTGTAACGCAGGCCACACTTGATATTACATGTCCTTACAAGGGATGGAGGCTCTACTTTTCTGAGGgttTTGTCGAATCTACACCTTATGTTGAGAAGATAAAGACATTTGAGCAATACTTCACATCGCAGATTGATCTTTATGACAAGGATGAAATTGAAAGGAAAGGAAGCATCCTGGTGGACTACAAAGACCTTCTCTTAAACAAACAGATATCTGCTGCTTTACCTGATCTTGCTCGTGAGCTCAGAGACATGCCTGATAAGATACTGGACTGTCTAGGCTTAGCTATTCATCAGgTGTTGACAAAGGATCTGGAAAGGCATGCTGATGAACTACAAGTTCAGGAGGGGCTACCCACAGAGGCCACGCCCATTATCAACATCCCACACATAAGTGCTAGgaTTTATAACTATGAGCCATTAACACCACTGAAGATGCTGAGAGCCAACATATATGGCAAATTTGTGGCTATTAGAGGGACTGTGGTGAGAGTGAGCAACATCAAACCTCTCTGCAGTAAGATGGCTTTTATCTGTAATAGCTGTGGAGACACTCAGAGTCTGGATCTGCCTGATGGGAAATACACTACACCCTCTAAGTGTCCACAAAAAGAATGCCGTGGTCGAATCTTTACGCCTAACAGAAGTTCTCCCCTAACACTCACTGTTGACTGGCAGACCATAAAGGTTCAGGAGCTAATATCAGATGACCAGCGTGAGTCGGGACGTATTCCTCGAACTATCGAGTGTGAACTCACTCAGGACCTGGTGGACAGCTGTGTACCCGGAGACATGGTCACCATTACAGGAATTATTAAAGTGTCCAATGAGGAAGGGAGtggaagaaataaaaaggaCAAGTGCATGTTCCTGCTGTATATCAATGCAAACTCGGTCAGTAACTCAAAAGGGCAAAAAAGCAAGTCTGCTTCTGAACCAGAAAGCCAGGGGGCATCAGTAGAGTTTTCGCTCAAAGACCTGTATGGCATCCAGGAGATTCAAGCACAAGAGGACCTTTTCAAATTAATTGTAAACTCTCTCTGCCCAGCCATCTATGGTCATTTGCTTGTTAAAGCAGGATTAGCTCTGGCTTTATTTGGAGGCTGCCAGAAATATGTGGATGATAAGAACCGAATCCCCATAAGAGGAGACCCACACGTGCTTGTTGTTGGAGATCCTGGACTTGGAAAAAGTCAGATGTTACAGGCAGTCTGTAACGTTTCTCCACGTGGCATCTATGTGTGTGGAAACACTACCACCTCCTCAGGATTGACGGTCTCTCTATCCAGGGACAGTGGTTCTGGAGACTATGCCCTAGAGGCTGGAGCTTTAGTTCTGGGTGATCAAGgGATCTGTTGCATTGATGAATTTGATAAAATGGGGAATCAGCATCAGGCTTTGTTGGAAGCTATGGAACAGCAGAGCATAAGCTTGGCAAAAGCTGGCATTGTGTGCACCCTTCcagctcgaacctccatcattGCAGCGGCTAACCCAGTGGGAGGCCATTACAATAAGGGGAAGACAGTATCTGAGAATCTTAAaATGGGCAGTGCCTTACTGTCGAGATTTGATTTGGTTTTCATCCTTCTGGACACTCCAAACGAGGACCATGACCACATGCTGTCAGAACACATCATGGCTATGCGTGCAGGCAAAAAAGGCATGGTTAGCAGTGCTGCAGTTGCCAGGAACTGCACTCAGGAGTCCAACATATCTATTCTGGAGATTTCATCAGACCAGCCTCTTTCAGACAGACTTAAGGTGCTTCCTGGGGAGAATTTTGACCCAATTCCCCACCAGCTGCTGCGCAAGTATGTGGGTTATGCCCGACACTACGTGCACCCTAATCTCTCAGCTGAAGCTGCACAGGTCCTTCAGGATTTCTACCTGGAGCTACGCaagcagaaccaatcagctgATAGCACCCCCATTACAACACGCCAGTTGGAATCTCTCATCCGCCTCACTGAGGCAAGAGCACGCCTTGAGCTCAGAGAGAAAGCTACTGAGAGTGATGCAGAAGATGTGGTGGACATAATGAAACACAGtttGGCAGATACCTACTCAGATGAATTTGGCCGGCTGGATTTTGATCGATCTCAGCTTGGGTCTGGGATGAGCAACAGATCAAAAGTCAAGAAGTTTGTTGTGGCATTAAACCAAATTGCTGAGCGTAGTCACAGGACGTTGTTTGACTTACCAGAGCTGCGACAACTGGCAAAAGAGCTCCAAATTCAGGTGGTTGATTTTGAGGGCTTCATCAGCGCACTCAATGAACAAGGTTACCTGCTAAAAAAAGGACATAAAAAATATCAGCTCCAAactatttgaataaaatgtttagtgcTGCTTTTATCCACTATTGTTCTGTGTGGATAATGCTTTTATAATTagttatatactttattattttctataatgAGCTTATGATATGTATGTTTATATTCAAGTTATTTATTGTATcttcaaatactttttcaaatactttttattatggaaatatgtattttctttatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112455 lncRNA upstream 130444 25517590 ~ 25537270 (+) True G83456
TU112448 lncRNA upstream 172054 25495158 ~ 25495660 (+) True G83449
TU112445 lncRNA upstream 203461 25463900 ~ 25464253 (+) True G83446
TU112437 lncRNA upstream 280124 25370251 ~ 25387590 (+) True G83440
TU112538 lncRNA downstream 114622 25798460 ~ 25802452 (+) True G83522
XR_002650361.1 lncRNA downstream 300843 25984681 ~ 25993012 (+) True LOC111193229
XR_002650362.1 lncRNA downstream 300843 25984681 ~ 25993012 (+) False LOC111193229
TU112638 lncRNA downstream 551078 26234916 ~ 26235175 (+) True G83601
TU112639 lncRNA downstream 551660 26235498 ~ 26253602 (+) True G83602
XM_022673033.1 mRNA upstream 338232 25160984 ~ 25329482 (+) False supt3h
XM_022673032.1 mRNA upstream 350339 25160985 ~ 25317375 (+) True supt3h
XM_022673038.1 mRNA upstream 350339 25160985 ~ 25317375 (+) False supt3h
XM_022673039.1 mRNA upstream 350339 25160986 ~ 25317375 (+) False supt3h
XM_022673036.1 mRNA upstream 350339 25167147 ~ 25317375 (+) False supt3h
XM_022673052.1 mRNA downstream 967 25684805 ~ 25690894 (+) True crls1
XM_007252046.2 mRNA downstream 31220 25715058 ~ 25717446 (+) True gdf3
XM_007252060.3 mRNA downstream 34636 25718474 ~ 25724909 (+) True LOC103021856
XM_007257443.3 mRNA downstream 151302 25835140 ~ 25902250 (+) False LOC103033987
XM_007257442.3 mRNA downstream 151309 25835147 ~ 25916844 (+) True LOC103033987
TU112312 other upstream 633593 25030037 ~ 25034121 (+) False c9h8orf74
TU112274 other upstream 732164 24935073 ~ 24935550 (+) False LOC111193228
trnal-cag_10 other upstream 839958 24827674 ~ 24827756 (+) True trnal-cag_10
trnal-uaa_4 other upstream 1357219 24310413 ~ 24310495 (+) True trnal-uaa_4
trnal-uaa_3 other upstream 1358824 24308808 ~ 24308890 (+) True trnal-uaa_3
XR_002650360.1 other downstream 235719 25919557 ~ 25972243 (+) False LOC103033015
TU112640 other downstream 551660 26235498 ~ 26249096 (+) False G83602
XR_002650363.1 other downstream 709052 26392890 ~ 26399267 (+) False spata7
trnay-gua_9 other downstream 824202 26508040 ~ 26508125 (+) True trnay-gua_9
TU112857 other downstream 1043985 26727823 ~ 26747751 (+) False fermt2

Expression Profile