RNA id: XM_022673065.1


Basic Information

Item Value
RNA id XM_022673065.1
length 3644
RNA type mRNA
GC content 0.44
exon number 29
gene id snx14
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 26488033 ~ 26506512 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGAGCACCGGAGGTGACGTCAGTTTAGGGCCAGACGCGAGTGTTTGTTATGGCTCAGTTTTAAAGCGTATCACGCTTTGAGTCTGCGGGTTTTAGACGCGCTTATAGCGCTCTGTTTACTCTCTGTTTAAAGCGggatttaataaaatgtaatgatgcCCAGCCTACAAACCCACTGATTCTTACAGAACCGCACAAACACAACCTCGAGCAGCGGATGGtggggctgctgctgctgctgccgctgcagGAGCCTTCAGTCCGCTCTGAACATGTCAACACTGAGGGCGGTTCTGGGGACAGTGCGGCTAAAAGTGGAGCTGATGAGAGAGGTGGGCCGGCAGTATCCTGTCTTCTGCTTTCTGCTCATCCTCCTGCTCCTCTGCACTGtcctgctgaacagGTATCTTCACATTATCATCATATTCTGGTCATTCTTAGCTGGTGTGGTTACCTTCTATTGCTCATTAGGGCCAGAAACACTGCTCCCAAATATCCTGATAACTGTTAAACCAAAGAAAAGGCCAGAACTGCAAGAGTTGTTTCCTTTGGCTCACAGCTGTGCTGTCTGTGGTAAAGTAAAATGCAAAAGACACAGACCAACATTGCTCCTTGAAAATTATCAGCCATGGCTAGATTTAAAAGTGCACTCCAAGGTGGACGCGTCTCTTTCAGAGATCCTTGAGCTGGTGCTTGAAAACTTTGTTTATCCATGGTACAGGGATATTACAGATGATGAGGCATTTGTGGATGAACTCAGAGTGACCTTGCGGTTTGTTGCTGCGGTGTTGGTCCGCCGAGCTCAAAGAGTTGATATTCCATCTCTCATAACACTCAAACTGCTAAAAGTTGCCATGAAACACATTGAAATTATTGCCAAAGCAAGACAAAAAGtaaAGAACTCAGAGTATCTGCAGCAGGCTGCGTTAGAGGAGTATGGTCCAGACCTGCATGTGGCATTACGCAGCAGAAGAGATGAGTTGCTCTACCTGCGCAAACTAACCGAGATGCTCTTTCCATACATCTTACCCCCAAAAGGCACTGACTGCAGATCTCTCACTCTTCTGATAAAAGAGGTTCTTGCTGGTTCTGTTTTCCTTCCCTCCATGGATTACTTGGCTGATCCTgACACTGTGAACCACTTACTGCTTATTTTCATCGACAACTCTCCACCAGAAGCTGCCACTGAACCTGCCTCTGCACTTGTCCCGTTCCTGCAGAAGTATGCAGATGTGCGCAATAAGAAAGCTTCGgggttAAAGCTTGAACTTAAAGAGATTCGGGAGCAGCAGGACTTGCTGTTTCGCTTCATGAACTTTCTCAAGCAAGAGGGAGCTGTTCATGTGCTCCAGTTCTGCCTCACTGTGGAGGAATTTAATGATAAGATCCTGTGCCCAGAGCTGTCTGATGCTGAAAAGCTAATGCTGCATGAGGAGGTGAGGAAGATATATGAAACATACTGCCTGGATGAGAGCGTTGACAAAATCCAGTTTGACCCTTTTATTGTGGAGGAGATTAAAAACATCGCAGAGGGCCCGTATTCAGGCGTTGTGAAACTGCAGACTATGCGCTGTCTGTTTGAAGCCTATGAGCATGTGCTCTCCCTGTTGGAGAATGTCTTTACTCCCATGTTCTGCCACAGTGATGAGTATTTCAGGCAGCTGTTGAGAGGGGCTGAATCCCCAACTAGAAACTCCAGACTTAGCAGGAATACGTCGAAGCGTGGAGAGTCTTTTGGGATTAGCCGCATTGGCAGTAAGATTAAGGGAGTTTTCAAGAGCACCACCATGGAAGGGGCCATGCTGCCCTCTTATGGACTCGCAGAAGGAGAGGATGATATGGTAGAGGAGGCCATCATGGTTATGGAGGACGACTTGCCCATGGAGGCCATCAGTACCCCAAGCACTCCTCGCAACCTGTCTGCATGGAGCATCACAATCCCCTATGTTGACTTGTTTGATGATGAGATCAAGAAGGAGAGGATTCCGGTGTACTGCATTGATGTTGAGAGGAATGACAGAAGAGCAGTGGGCCACGAAACTGAGCATTGGTCAGTGTATCGAAGATACCTTGAGTTTTATGTTCTTGAATCTAAGCTCACAGAATTTCACGGCTCGTTCCCTGATGCGCAGCTTCCATCCAAGCGGATAATTGGGCCTAAAAACTATGAGTTTTTAACATCCAAGCGTGAGGAATTTCAGGAATATCTACAGAAACTTCTGCAGCACCCTGAACTGAGTAACAGCCAGCTTTTGGCAGACTTCCTCTCGCCTCACAGCATGGAGTCCCAATTCCATGACAAGATGTTGCCAGATGTCAATCTTGGCAAGATAATCAAATCTGTGCCTAGCAAACTGATCAAGGAGAAAGGGCAGCATCTAGAGCCATTCATTCAGGCTTTCTTCAACTCGTGCGAATCACCAAAGCCCAAGCCCAGTCGGCCTGAGCTTACTATTCTCAGTCCCACATCTGAGAACAACAAAAAGCTTTTCAATGAACTGTACAAAAACAACGCAAACCGCTCTGAGAACATGGAGAAGAGGCACAACCAGAATTACTTTATGGAGATGATCACTGTGGAAGGAGTGTATGACTACTTAATGTTTGTAGGTCGTGTAGTGTTCCATATACCTGACTGGCTGCATCACTTATTGATGGGTGGGCGCATCCTTTTCAAGAACACACTTGAGGCGTACACGGATTATTACCTGCAGAACAAACTAAACCAGGTTTTTCAGGAGCATCGTGTGGTTTCACTCATCACTCTGCTTAGAGatgctgtgttctgtgagaACAGTGATCCACGCTCTTTAGAAGACAAGCAAAAAAGAGCCAAGAGGACTTTTGAGGAAATGAGGAATTACATTCCAGATTTATTTGGAAAATGTATTGGAGAGGATGCCAAGTCTGAGGGAATACGTCTTCTCTTTGATGGCCTTCAGCAGCCAGTTCTCAACAAGCAGTTAACCTACATCCTGCTGGATATAGCAATTCAAGAGCTATTTCCTGAATTAAACAAACTTCAGGTACAGAGAGAAACCTCAGTCATGGCTCCATGGATGTAGAAAAGACACCAAGGATGGAGACGTGTCCATATCTCCGTTGAATGTACAACATCCTCTATAAATCTCTGAAATACCACTCTAAGAATACTAACTCCCATGTCTGTCTTATGGGTCAAAGCATGAAATGTCTTATACTGAGCTATTTGCTTGGTAACTATTAAGCTATGGAGAGTGAAATAATGCACATGttttatgcattattttaaatatgttttaaatgttttattctttgtcATAGACTGTGGacagaattatgttaaaatatttataaatactgAAGGAAGGTACTGGAAGAACCGGTAAGACTTAACATTTGAAAGCTTTAAATTATTGGTTTGTGATTGTAATTTAGTTTGAAGGGGTTGTAGAATATTTGTGTTTGTCATGTCCTGTTTGTGGCTTAATTAAGAAGCTGTGTTGCATTTTGCTGCATCAGAACTGACTAAAAGCTCTAGGAAAAGGAATCATGTCCTAAAGATGTGTGCTAACATGACCCTAACACTGAGGCCTTGCACTGAAACAATATTTAAGATGCAAATGCTATTGTCTTATATAACAAATAAAGCCATTTTGTATACTt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112730 lncRNA upstream 64974 26422514 ~ 26423061 (+) True G83672
TU112718 lncRNA upstream 147763 26339831 ~ 26340272 (+) True G83663
TU112716 lncRNA upstream 148336 26339182 ~ 26339699 (+) True G83661
TU112701 lncRNA upstream 160749 26326032 ~ 26327286 (+) False LOC103031022
TU112700 lncRNA upstream 177087 26310709 ~ 26310948 (+) True G83649
XR_002650367.1 lncRNA downstream 827 26507339 ~ 26509319 (+) True LOC111193231
XR_002650364.1 lncRNA downstream 2099 26508611 ~ 26565844 (+) False LOC111193231
XR_002650366.1 lncRNA downstream 2099 26508611 ~ 26513522 (+) False LOC111193231
XR_002650365.1 lncRNA downstream 2099 26508611 ~ 26511099 (+) False LOC111193231
TU112852 lncRNA downstream 212466 26718978 ~ 26719365 (+) True G83760
XM_007257420.3 mRNA upstream 3413 26474776 ~ 26484622 (+) False LOC103026145
NM_001291252.1 mRNA downstream 98206 26604718 ~ 26613764 (+) True bmp4
XM_007257406.3 mRNA downstream 186906 26693418 ~ 26716015 (+) True LOC103023862
XM_007257407.3 mRNA downstream 186911 26693423 ~ 26716015 (+) False LOC103023862
XM_022672485.1 mRNA downstream 221406 26727918 ~ 26777488 (+) True fermt2
XM_022673069.1 mRNA downstream 289296 26795808 ~ 26897068 (+) True stxbp6
XR_002650363.1 other upstream 88768 26392890 ~ 26399267 (+) False spata7
TU112640 other upstream 238939 26235498 ~ 26249096 (+) False G83602
XR_002650360.1 other upstream 515792 25919557 ~ 25972243 (+) False LOC103033015
TU112312 other upstream 1453914 25030037 ~ 25034121 (+) False c9h8orf74
TU112274 other upstream 1552485 24935073 ~ 24935550 (+) False LOC111193228
trnay-gua_9 other downstream 1528 26508040 ~ 26508125 (+) True trnay-gua_9
TU112857 other downstream 221311 26727823 ~ 26747751 (+) False fermt2
TU112859 other downstream 221396 26727908 ~ 26747751 (+) False fermt2
TU113122 other downstream 1309293 27815805 ~ 27819547 (+) False fam98b
TU113547 other downstream 2463752 28970264 ~ 28970827 (+) True LOC107197841

Expression Profile