RNA id: XM_022673127.1


Basic Information

Item Value
RNA id XM_022673127.1
length 6977
RNA type mRNA
GC content 0.48
exon number 22
gene id LOC103038403
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 29414512 ~ 29625594 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctctctttttctctgtctgctGTCTCCTCTCTGCCCATCCTTGCTTTGCTTTCCATCGCTCCGCCTCATTGGTGCTGCCCCCATTCCATTCCTTCTtctcccctccctccctctctctctctctctctctctctctctctccctccctctctctctctctctctctctctctttgcacAGTCTCCTCCGTTGCTTTCCGTCTCCCctgctcgctcgctcgctcccCGTCGGCTTTTAACccacctccccctcccccccatCACCACCACGCGCACCACCCCTCCAAAAATGATGAGCATACAGGGGGGCTAAAGAAGTTTCCAGCGCGCGCGCTCTGAAAACGCacgagaggaggagagagaggaagaaagagtgtgagagcctgagaaacaagaaaaagaagacGACTactgaagaaagaaaagaaaaagagagaggaagacaatCAGGAACGataaaaaaagaggaggaggaggaaaagttTGAGAGAAGACAGCGTTCCAGCACTGAAAATGAAATTGGAGGAGGAGTGGTGAACTCTTGGTGGGGGTTCTAATCTAACGTCTACCACCGCCAGCTGAGGATCAACACCAGGTCTGGACCAAAGAGCAATCAAACCTGCAATCATATCAGATGGAGGTGGATGTAGCAGATGAGAAGCGCCACCACACACGCTCAAAAGtgcccTTGGAACCAGCGATACAAGAGCTATTCAGTGTGTACGGCTGCCCTCTGGCCAAGAAGAGGAAAACACACGACAGGCAGCCCCTCGAGCCCGTGGCCAAGAGAAAGGCCTTTCTGACACACGCCGAGCCGCTGCAGCCCATGGAGGACTGCTACGAAGCCGAGGCGGCGGTGGAGGAGATGGacgagaaggaggaggaggaggaagaggaagaggaggaagctggggaggaggaggaagaggaggcggtagaggaggaagaggaagaagaagaggaggaaggagAGGAGGAAGTGGAGGAAGAGTATACAGACAATGAGGAACAAGTAGTACACGAGGAAGGAGAGGTGGAGAACggagaagaggaagaggcggagcaagaagaggaggaagtggtggaggaagaggaggaagaggagggtgAGGATGGTGATGGCGAAggggaggatgaggaggaagaagaagaggaagaggaaggagaggaggaggaggatgatgaagagGACCAGCATCATGGTCACGTCAATCAAGAAGGCAACCAGATCAACGGCAGCTACACCAAACCCAGCCCTACGGTAGAGAAGGACGACAACAACAACGATGAATACGACAACTACGATGAGCTGGTGGCCAAATCTCTCCTCAACCTGGGCAAAATCGCTGAGGACGCTGCTTACAGGGCCATGACCGAGTCCGAGATGAACAGCAACTCCTCCAACAGTgctgaggaggaagaggaagaggaggaggatgaagaagatgatgaagaggaagaggacgaagacgaggaagaggaggaggacggTGAGGACGGCTCTAAGAAGGGGGAGCTGAGTCTGGACGTGGACAGTGATGTGGTGAAGGAGACAGTGGACTCTTTGAAGCTTCTGGCTCAGGGTCACGGAGCTGTCATCTCTGACAACCTTGATGACAGGAGCTATCAGGAAGATATCAAAAACGAGGACTGTGGCATGAACGGTCTGGCTGGATATGGGTGTAACGGCGGCGCTAACAGTTGCGCATTGGGAAAGACCACCAGCAACGGTCAGATGGTGGAGGAAAGTGATGAGGACGTGTGTTTGAGCAGTCTGGAGTGTCTGAGAAACCAGTGCTTTGACCTGGCGCGCAAACTGAGCGAAACCAAGCCGAGAATCGAAGCCGAGCGCCTCAACCACAACCAGGACAACCACCATCTGCACCAGGATATGCTGCTGCAGCAGGGGGTCTACGGAGACTGCCACGAGCAGGACAACACAGAGGAACGCCGCGTCCTGGAGCGTAACTACTCGGACATGGTCAACCTTATGAAGCTGGAGGAACAGCTCAGCCCTCGCTCCAAAGCCCTTTCTAGCTGCGCCCGGGAGTACGACAGCTACCAGGACCGGGACGAGGACACCACCTCCATCGCCTCGGACCATTCAGAGGAAGTGTTTGACATGACAAAGGGAAATCTCTCGCTGCTGGAGAAGGCCATAGCGCTTGAGTCAGAGCGGGCCAAGGCCATGAGGGACAAGATGGCCTCGGAAGCGGCCAGGAGGGAAAGGCTGCATCTCCATGAGGAGAACCACGGCCTGAGGCTCAGCTGTGCAGAGGAGCGCAAAGCAAGGCTGCATCACGACGGCCTGAAGAAGCCCTACTATCCTAAAGattCCTCAAGGTCGGACAAGAAAGAGAGCCGGTGTCCGACGCCGGGTTGTGATGGCACAGGTCATGTGACTGGGCTGTACCCTCACCACCGAAGCCTGTCTGGATGCCCTCATAAAGACAGGGTCCCTCCAGAAATTCTTGCAATGTATGAAAATGTTCTTAAGTGTCCTACACCTGGCTGCACTGGACGCGGCCATGTCAATAGCAACAGGAACTCTCACCGGAGCCTCTCTGGATGCCCAATAGCGGCTGCTGAGAAGCTGGCCAAAGCCCACGAGAAGCACCAAGCCTGCAACGGAACCACCAAGTCCAACCAGGCATCAGACCGAGTGCTGAGgcccATGTGTTTTGTGAAGCAGCTGGAGATCCCGCAGTATGGCTACAAGAACAACGTACCCACCACCACCCCGCGCTCCAACCTGGCCAAAGAGCTGGAGAAGTACTCCAAGACCAGCTTCGACTACAACGGCTACGACAGCCAGAATGTGTACGGCAAGCGCGCCATCGCTCCCAAGGTCCATGGCCGAGACACGTCGCCCAAAGGATACGACgCTAAGCGCTACTGTAAGAACTCCAGCTCGGCGAGCAGCACCACCAGTAGCTACgcccccagcagcagcagcagcctgagctgtggaggaggaggtacgggagcaggaggaggaggaggaggagagggaggaaGCAGTGCCAGCAGCACCTGCAGCAAGAGCAGCTTCGACTACACTCACGACATGGAGGCCGCGCACATGGCCGCCACCGCCATCCTCAACCTGTCCACGCGCTGCAGAGAGATGCCCCAGAGCCTCGGTGGCAAACCCCAGGAGCTCTGCACACGGAAGCGGGACGTAGAGGTGGATGATGATGGAGTGATGATGGACGTGAGCGTGTGTAAGCGTGTTGGCGGAGGCAGTCGCTCGCTGGGCCCACTGGAGCCCGTGTTGGGCCGGCGGGAGCGGGAGGTCCTGCCGGGCACCCGCTGCTGCCCCCTCGACCCCTGGGAGCTGCCCGTCGACTACACCAAGATCAAACGCCTGGAGCACGACAGAGAGtCAGATGATTTGGACCCATTCCAGGACATTCTGGAGGACAGTGCGTACGCCACGGACGTCACCATCCCGAGTCCCAAGCCTAAATTCGCTCCctgcaaagaaagcaaaaagGACCTGATAACTCTTTCAGGTTGTCCTTTAGCCGATAAAAGCATTCGAAGTATGATGGCAACCAATTCGCAAGAACTCAAAAGTTTGTCAGGATGCCCACGCGCTcgcaagagtggcataaagattACACACAGCAAAGAGGACAAGGAGGACCAGGAGCCAATCAGGTGTCCTGTACCTGGCTGTGACGGACAGGGTCACGTGACGGGGAAGTACGCATCTCACCGCAGTGCGTCAGGCTGCCCTCTAGCGGCCAAACGGCAGAAGGACGGCTATATGAATGGGGCACAGTTCACGTGGAAGGCTGGGAAGACGGACGGCATGTCCTGCCCGACCCCGGGCTGTGACGGCTCGGGGCACGTCAGTGGCAGCTTCTTGACCCATCGAAGTCTGTCAGGTTGCCCACGTGCCACATCCGCCATGAAGAAGGCCAGGCTGTCAGGGGTGGAGATGCTTACATTAAAACAGCGGCCAAGCAATGGTTTAGACAATGATGAGGACATTAAACAGCTGGATGAAGAAATCAAAGATTTAAGTGAATCTAATTCACAGGTGGAGTCAGATATGATCAAACTTAGAACACAGATTACCACAATGGAGTCTAATCTGAAGTCAATAGAGGAAGAAAACAAGAAACCGCCGCTACACAAAGAGCCTCCACTTAGAAATAACAGCTGTTTACAGTTGCATCAGCGAGACCCGATAAGTGAACAGAACTTTGACGCATACGTGACCACTCTGACTGACATGTACACAAATCAAGACCAGTACCAGAGCCCAGAGAACAAAGCCCTGCTGGAGAATATAAAACAAGCAGTACAAGGGATCCAAGTCTAGCCAATCAGCAAACTAAGAGGCTTCTGTCGTGTGTATAATCGTGGAAAtcgtggggaaaaaaagagacatttaCAAAACAAGAACAAGACAAACGGGATGCCTCGCGGTTTGCTGCTGTAATTTAGCAGACAGTGTTAAATATTCACATTATGTTCTTTCAAAAGTGTTATGCTTACAAATCTTCATGACTTTTATTTCATGATTTCCCTTTTATTTTTGGTCTTGCTTTGGAAAATAATTCTAGTTCTCGGCAGAATAGTTTTTGATGACATTCACATTTTGTACGTTTTCATATGAGCTAACATAGTGTGATGTAATGTTTCTAGCTGCTCATGtatgcacattttagtgtatATTTCTGAACAGTAAGGCAAACGATATTGGATATACATTCTTTTTTAATGCTTGCTGACTAAGCGCTTTAGATCGAAGATCTAAACGagaacatctaaacatctaaacaaggAACATGCAAAGATATTagctactttttaaaaatgatctttTCTCCTCATTGAATGATTTTATGGACTTTCGGAAGATGTTTTTGTGTGCAGATTGTAAAATggcaggacttttattttgtaactaTGCTCCAGAGTTGGCACCTGGTCGTCGGGCGGCGTGAACGTGGGAGAGCATTTGGGTTGTTGGAAAGCATTTGTAGAgcattgaagaagaaaaaaaaaaaaaaaaacacaaaaatggaaTCAACTTGATGTATGAATGTCACagttttattgtaaacatcatGACACGGAAACCTGATGGTGGAAGTCCCAGAGTTTAGCGAAGAACATTAACTtcgagaagaaaaagaaaaaaagtatttttttcttattttttcatattgatTAATTTGGTGTTGGTAGCTAAAGAGCTACTGTCATTAAATCTGCATCAGCGTAATGGCAAACGAGCTTCTTAGGACCACCCCAGCATCAGTGTTCATTTAGCATGATCCTCGTATCGTAATCGTAGCTAGAATCTATCTCACACCACATCAGCAATATTTACGACTATATTCACAGTGTTTATGACGATGAGAGGCAATCTGGGGAAACAGTTGGGGGTATATGCAATTTCCTGTTTGTAGACATACATAGTGGATGGAGTGGggaagcaaaaaaaatgaaaaaagatgcTTTTTACTGTGTGTAAATGATTGATTTTTCTATAAATCTTTTAATACTAAATTTTTAAAGTGGGTATACGTGAACATTCAATTTCGAGACAGGCAAAgaaatctttttctttctttttattttttatttttgttaatttaggaCAATTTTAATGCACAGGGACACCTTCGTTTCCATGTTCTGATGGTTTTACATGAACTACAGCAGTACTTGGAGCCTAAAGTGGAAGAAGAAGGGTTttgtagaatatatataaatgaactaTGAAAGCGGGACTTACAGGGTCATTGTCCCCACTTATGTGCCAGTAGACTATTTGCACTTGTCCTAAAGATATATGGTCACATGTGGTGGTGtgcaatctccaagtgtctcttcGGCACACGATTgggacgaagaagaagaagaggaagtagaagatgaagaagaagaatggcAAGGATGTTACTGGACTGTATCGGGTGGAGACTACAGGGAATCTGAACACAAATGAGGACAATATCTTTACCAGtaatattatgaattattaaatgatGCTATTTCATTTTGGTATCTTCTAGGATCATTAAAATCCCCAGCAGCACTTTATGTCTATCACTGtacaaaatcattaaaaaatactcAATCAATCGATGGAGTCACAACGAGAGgcgaaagaaaaaaatgaaagaagggAAAAACGTAAAAGCGGGCAGGCCAATGGATGGAGTGTTGGAGTGTTGTCTGAAGCAGTGAAGGGAAGTGTTGCAATACTACAGTACGTCTCCTACCCACCCCTACTACTACTTTCTGTTCTGTTACCTGCTGTAGCAACCACGCTAAGACTTTGCCTTCTGGAGAGCGACTGCAAAAGATGCTTGTCTTTCACCGGATCTCGTCCATTGTACAACTCTTCGTCCTCTTTTCGGACACCATCCTCCATGACTGCATATGCCTTTCATCACAGCATCGTGTCTGCAGCTTTTTGCCAATATAGTAATGCTTTCGATAGAGTAATAGCTAGTATCAGTTTTTGAATAAAATTATCGTTATCAGTACAATGGAAAAGGGATTTTAAGCACAAACATGCTGCTCATCTACTGTTGCTACATAatatcaaataatttaaaaaagaagaacaagaagaacaagaagataTCTGTGACTATTTACCTAGGGAAAAACAAAAAGGTGTCACATATTAGAATGCTGAAATTTCATATGAATTATTGTGAATTCATCagagtttatttattctaaattcTTCATTTCGAGGTTGATTTGAGTAATCATCGATGAAGACAGGATTTTGTACAAACTATTGTGCTCTCTGTGGAACTGaagtttgatttatttttgtacaaCACAGCATGAATTTGTTGACCTTTTAGTTTTGCTATAAATGTGTGAGATCACAAGTTGctgtgatttttcatttttaaattgtggAATTTGTACAATTTTTGTCATGCTGGATGTTGACACATCTTACtctgaataaagaaaaatggtGTTGCCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113789 lncRNA upstream 44142 29389228 ~ 29389688 (+) True G84484
TU113778 lncRNA upstream 74171 29359197 ~ 29359659 (+) True G84473
TU113767 lncRNA upstream 92617 29340931 ~ 29341213 (+) True G84462
TU113704 lncRNA upstream 247892 29179869 ~ 29185938 (+) True G84415
TU113702 lncRNA upstream 257843 29172806 ~ 29175987 (+) True G84414
TU113856 lncRNA downstream 116433 29742027 ~ 29742487 (+) True G84534
TU113857 lncRNA downstream 121033 29746627 ~ 29746940 (+) True G84535
TU113884 lncRNA downstream 233866 29859460 ~ 29864834 (+) True G84558
TU113933 lncRNA downstream 306366 29931960 ~ 29932390 (+) True G84591
TU113940 lncRNA downstream 333781 29959375 ~ 29961212 (+) True G84597
XM_007257305.2 mRNA upstream 109387 29265053 ~ 29324443 (+) True eipr1
XM_022673123.1 mRNA upstream 218157 29187575 ~ 29215673 (+) True adi1
XM_022672486.1 mRNA upstream 464802 28854283 ~ 28969028 (+) True LOC111193134
XM_007257310.3 mRNA upstream 632591 28775149 ~ 28801239 (+) True arel1
XM_007257327.2 mRNA upstream 685402 28739241 ~ 28748428 (+) True LOC103029222
XM_007257326.3 mRNA downstream 1041 29626635 ~ 29716871 (+) True pxdn
XM_015607883.2 mRNA downstream 109019 29734613 ~ 29737276 (+) True LOC103028385
XM_007257323.3 mRNA downstream 132233 29757827 ~ 29766422 (+) True LOC103027650
XM_022673130.1 mRNA downstream 160432 29786026 ~ 29815914 (+) False nol10
XM_007257320.3 mRNA downstream 160434 29786028 ~ 29815914 (+) True nol10
LOC107197844 other upstream 354932 29071891 ~ 29078898 (+) True LOC107197844
LOC111193135 other upstream 390091 29043217 ~ 29043739 (+) True LOC111193135
LOC111193240 other upstream 392223 29040979 ~ 29041607 (+) True LOC111193240
TU113562 other upstream 408716 29004094 ~ 29025114 (+) False LOC103045392
LOC103045392 other upstream 433724 28999502 ~ 29000106 (+) False LOC103045392
XR_002650381.1 other downstream 1829390 31454984 ~ 31462260 (+) False pnisr
TU114720 other downstream 2197992 31823586 ~ 31824388 (+) True G85189
XR_002650383.1 other downstream 2573589 32199183 ~ 32218762 (+) True LOC103035447
XR_002650384.1 other downstream 2573589 32199183 ~ 32215147 (+) False LOC103035447
XR_002650385.1 other downstream 2574297 32199891 ~ 32218762 (+) False LOC103035447

Expression Profile