RNA id: XM_022673135.1


Basic Information

Item Value
RNA id XM_022673135.1
length 2292
RNA type mRNA
GC content 0.46
exon number 6
gene id LOC103038716
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 29989786 ~ 30008928 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATAAGAAGCAACAAAGGGTTTCGGGCTGGGACTAAACGTGCTGAGGAAACCAGGAACAGACCATTTTTCTTACGGAATGCCAGACATTTTTTAACTAATGCTAAACTTTTATGGAGGAATAAACCGGTTGCTGTGTGGCTTTTTGTGCTCTGGATGTCCCGTCTTCTGTGGGTCCAATTGTacttgctgctgctgttgaaaACGTGGTATCTTTGTATTTTTGTCACGGTCTGTGCAGGAATACTTTGTAGCTTGTTGTAAATCAATATTAGTTGTCATGAGACATTTGTCTGTTAGTGCAGATTAAAATCATGCTGTTACTTATAAGTACTTTGTGAGACATTTATATCAAAGCAAATGAATGCCTTTAAGAGagtttagattatttttttttttcagaaaagaaataaatattgtgcTGTAAACTGAGCGTTCATAAAAAGTAGTTATTAAATAACGAGAGCTTGTCATAAAAAGCTTTTCAAAGTGTGAGTGTATTTGAACCTCTGCCCTTTTACAACATATTAActtcatgttttaaaataatgtgtggAGAAAGTTAAATGAACAGCTGGAGAGCTAGAAACTGAGCTTCTCTTGTCCTCAGCAGAAAACTGAAGTGGAGTATTGAGTGGAAGTTCGGCCTACAAGCCTTTAAGCCTGCAAGTCTGTAATTACTGACTGTCCATTGCAGGAGGAGCTCAGTGTCCCCAGTAGCATCTTTTTGACACTGAAATCCAGTAGAGTCTGTAGAAAAAAGGCTAGATTTTTTGGAACTCAGAGACTAAGAGTTTTCTACAATGGGAGAAGACATGGACGGCAAACCTACAAAACTACACCTGAAATCCGAAGTAGGACTGGTTGGAGGAATATCCCTGATTGCTGGGGTCATGATCGGATCTGGGATTTTCATGTCTCCTCAGACCGTCCTGCTGAACATTGGGAGTCCTGGTGCTGGCTTGGTGATCTGGGCCTGCTGTGGCCTGTTGGCTATGCTAGCTTCTCTCAGCTATGCTGAGCTGGGTACAGTCATCCGAGAGTCTGGAGGGGAGTATATCTACATACTGCGGACCTCAGGCAACCTGATGGCCTTTGTCATGGCTTTCACATCTATAGTTGTTGTAAGGCCAACCAGCTTGACTGGAGTGGCTCTCAGCTTTGCCCAGAACGCTGTGGCACCCTTCTACTTGGAGTGCCAACCTCCAGTGGTGGTGGTGAAGTGGGTCGCTGCTATTGGGATCCTGTTTTTGACCATAGTGAACTGCCTAAATGTACGTTCCTCCGTGGCTCTCACAGTGTTCTTCATGGTGGTGAAATTCATTGCACTCGTGGTTATTGTGATTGGCGGTGTCGTGTTACTCGCTCAAGGTAACACTGCCAACTTCCAGAATTCTTTCGAAGGAACCAATCTCAACCTTAGTGCCATAGGAATGGCGTTCTATCAGTGTCTGTGGTCCTACGATGGCTGGAACAACCTGAACTATGTAACAGAAGAGCTCAAACGGCCTGAGGTAAACCTACCCAGAGCTTTGATGATTGCCATCCCAATGGTAACTGTCCTCTACCTGCTGGTCAATGTAAGTTATCTAGCTGTCATGACTCCCAGAGAGCTGGCAGTTTCCAGTGCTGTGGCTGTTACATGGGGgaATAAGGTGCTGGGAGGCTGGGGCTGGGTGATGTCCGTTGCAGCAGCTCTGTCATCCTTTGGGTCTCTGAATGGATCGTTCTTCAGTGGAGGACGAGTCTGCTTCGTAGCTGCCAGAGAGGGACATATGCCTGATATCTTGGCCATGGCTCATGTTCGACGCCTCACTCCATCTCCAGCTCTCATCTTCACCACTGTTATCTCCCTCATTGTGCTCATCCCTGGAGACTTCGAGGGAATAGTGAACTTCTTcagTTTCACAGCCTGGTTCTTCTATGGCGTCACATTATCAGGACTTCTTTACCTAAAAATCAAGAAACGTGATCTTCCTCGTTCATACACGGTCCCCATTATTATCCCCTTCCTGGTCCTGCTGGCAGCAGTGTTCCTCGTTCTTGCTCCCATCATCGACAACCCTCAGATCGAGTACCTGTACGTGACCCTCTTCATCCTCAGCGGAGTTCTGATTTATGTTCCATTCATTCACTACAAACTGTGTCCCGGATTCCTGAACAAACTCACAGTCTTCCTCCAGCTCTTCCTGGAGGTGGCGCCAGCTGATAAAAACCTGTGAGGTTCCAGGACCTTCTGGTTTGGGAGACATTTCTTGTCCCAACTTTGTAGTAACACTGAACACTGTAGCAGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113940 lncRNA upstream 37629 29959375 ~ 29961212 (+) True G84597
TU113933 lncRNA upstream 66451 29931960 ~ 29932390 (+) True G84591
TU113884 lncRNA upstream 134007 29859460 ~ 29864834 (+) True G84558
TU113857 lncRNA upstream 251901 29746627 ~ 29746940 (+) True G84535
TU113856 lncRNA upstream 256354 29742027 ~ 29742487 (+) True G84534
TU113968 lncRNA downstream 62029 30070957 ~ 30072897 (+) True G84623
TU114049 lncRNA downstream 176955 30185883 ~ 30243942 (+) True G84685
TU114051 lncRNA downstream 176955 30185883 ~ 30243942 (+) False G84685
TU114058 lncRNA downstream 210210 30219138 ~ 30224378 (+) True G84691
TU114059 lncRNA downstream 238528 30247456 ~ 30248237 (+) True G84692
XM_007257318.3 mRNA upstream 145576 29847628 ~ 29853265 (+) True odc1
XM_022673130.1 mRNA upstream 182927 29786026 ~ 29815914 (+) False nol10
XM_007257320.3 mRNA upstream 182927 29786028 ~ 29815914 (+) True nol10
XM_007257323.3 mRNA upstream 232419 29757827 ~ 29766422 (+) True LOC103027650
XM_015607883.2 mRNA upstream 261565 29734613 ~ 29737276 (+) True LOC103028385
XM_015607907.2 mRNA downstream 3450 30012378 ~ 30015122 (+) True LOC103025336
XM_022673138.1 mRNA downstream 139331 30148259 ~ 30173142 (+) True pask
XM_022673140.1 mRNA downstream 139331 30148259 ~ 30173142 (+) False pask
XM_022673139.1 mRNA downstream 139331 30148259 ~ 30173142 (+) False pask
XM_022673141.1 mRNA downstream 139331 30148259 ~ 30168758 (+) False pask
LOC107197844 other upstream 919943 29071891 ~ 29078898 (+) True LOC107197844
LOC111193135 other upstream 955102 29043217 ~ 29043739 (+) True LOC111193135
LOC111193240 other upstream 957234 29040979 ~ 29041607 (+) True LOC111193240
TU113562 other upstream 973727 29004094 ~ 29025114 (+) False LOC103045392
LOC103045392 other upstream 998735 28999502 ~ 29000106 (+) False LOC103045392
XR_002650381.1 other downstream 1446056 31454984 ~ 31462260 (+) False pnisr
TU114720 other downstream 1814658 31823586 ~ 31824388 (+) True G85189
XR_002650383.1 other downstream 2190255 32199183 ~ 32218762 (+) True LOC103035447
XR_002650384.1 other downstream 2190255 32199183 ~ 32215147 (+) False LOC103035447
XR_002650385.1 other downstream 2190963 32199891 ~ 32218762 (+) False LOC103035447

Expression Profile