RNA id: XM_022673141.1


Basic Information

Item Value
RNA id XM_022673141.1
length 4064
RNA type mRNA
GC content 0.51
exon number 19
gene id pask
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 30148259 ~ 30173142 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAAACACTGCAGAGTTCGGGTTTGACTGGGGGAGAAGCTCGGCTGGATTGTGATGTTTTTACCGCCGTTATCTGCACTTTTATAGCTCCAGTTTTATatggagtttaattaaatactCCAGTATTGAACCGTTACAGCGCCGGAATCTGATAAAGCTGATTTCTGCCTTTAATCAAGCGGGCTGTGCAGGAGGCCTGCCGGTCAGACGctcagactgagagagagagagagagagagagggtgcAGAAGATGTCGCTCTGGCGCCACATTGTTGATAAGCAGAAGGGCAGTGGCGGTGGTGCCCTGGGCGACAGTGTGTGTACACTTccccacagctccagctcaggcCTGCAGGGAGATGATTCCTCAGATATGAAGCAGACACAGCCCTGTCTACAGCATCTACAGCCTGCTGGAAACAAGACCTGTCTGCTGCGCAGTCCACAGTCCAATACAGGTTTTATCAAAACAACCCCCTCAGGATCCATGAGGGACGTTTCAGCCTCCAGCCTGCACAGCTCTCCAGGTCATTGTTGCACTCCAGCTCAGTCGCCTGCTGGATTTGAGAGATCCTTACTCAGACAGCTTGTCTCTGGATCTCCTCAAACTCACAGTGCTGGAAAGAGGAGGCCACAACTCATACCCAACCCTAATAAGGCCACCGTGACTGTGGACAGGACCACAGAGAAGGTGTTGGAAGTGAGCAAGCAAGCATGCCAGCTATTGGAGTGCAAGTGCAGTGATCTCATTGGTCAAACAGTGACATCATTCCTGAAGACCAGTCAGACCACAGATAATGTCCTGGGTGAAGAAAATCTGGACACTGATGGGAACTTGATTACCATATTAGGAAAAGTGGTAAATGCAGTGAGTAAGACTGGGGCAGAGTTCCCTGTGTCAGTGTGGACACAGTCACATGACCACACGTGTGTGCTGCTTCTGGAGAAAGTGGAGAGAATATCAGCCCACTTCTCCTTCTCTCAGGAGGGTGGGATCCTCAGCTGTGATTCCACCTTTGCTCATCTCCATGGGTATTGTGATGCTAATGAGCTGACTGGGCTGTCAATCACTTCGCTGATGCCGTCACTGCATGTTCCACTGCACTGCAGGGCCATACCTAAGATGTCGCGTGTGCAGAGGTTGCATTTGCCAGGCAGCAGTGGTACagctctgcgtgtgtgtgttcggCTGCGGGCTGCTGTGTCCTGTGGGAAGTTATCAAACCAAATAAACACATCAGCTGGATCCAGTCCCAGTGAGAATTCAGTCAGAAACTCTAAAGAGATCAGCCCTCCTGAACCAGGTGGAAATGAAAGCAGTAATGATGGCCTTTCCTCACCCAAGTCGGGGGTGGTGTATTCCGGGTCACTGTGGGCGTTTGCTCCAACCAGCAGCCTTCTGACTCTCCATCCTAATGGCACCAtaaacagcatcagcagcatctACTGCCCCCTACTGGTTGGCTACACAATGGCCCAGCTGCTTGGCAAGAATATCACCTTCTTGATTCCAGCCTTTTATGAGAGAATGTGTGCTTTTGACCAGAGCACTAGCCCTGTAGCTCATCAACGGGATGGAGCCACACCAAAACCCTCAAGCAACACTGGTTGTAATGGTGTTGGACACGGTGCTTCAGGcataactgctgctgctgttacggAAAAGGAGGATCAGCAAGACACATACATTTTCTATATAAATCTGTTTTCAGATCCTCAATCACCGATGGTTGGAGACAGCATGATGATGTATCATGCAAAACAAAGAAGAGAATGTGTTGGGAAAGGAAGAAGAGTTCTTGCTGGAGTCCGGACTAAACTGGTGCTGCAGGGCACAGCTCCATGCACCAGTTCCTCTCCTGCAGTTCCATACAAGCCTCAGGACAGGTTGGAGGACACATCCGAACTTTGTGAAgaagcagctgcagcagcagcagcagcaggtcagtGTAATGATTCTGTCGCAGAGGAGTCCACCACAGCCCTGCTACAGACCTTTGCCCTTTTGGAGTCTCAGGATTACTTACCCCAGAACGGACACCAGCCACCCAAACGTGATCAAGGGGTCCAAGAACCAGTGGGGTCTGTACCGTGCCCAAGAAAAGAGTGTACAGCAGTGGGCAGCCTGTGTTCGGATGGTGGGCTCCAGGATTCAAGCTTTGAGGTGATATCCATCGGGAGCCGGTCGTCTTCTGGGTTCTGTGAGAAGTGGGCGGGGCCTGAGAGGCCGGACGACACACAGCAGGAAGCAGAAGCAGCAGTGGAAGTATTGGACTCGGGCAGCTGCTTCTTAAACCTGGACGCAAATGGCGATGTTATCACACACGTTATAGCAAACCTGGACCTGAGCGAGAGCGTAGAGGTTCCCAATGATCCTGGTGACCTCGATGCCTCTCTGACCTCGTGTGACACGGCCGAACTCCTGCGTACACCCTCTCCATACGTGGTTGAGTCTGATGCTGAAACCGAGCCCCTAAATGCACGGGGAAGCTCACTCCTAGATCAGAAAAGTGCAGAAGGTTGCCTCAGCACACAGCAGAAAGATTCAAATCACCAATTTGACCCTCAGCTGAACGATCTGGAGCCGTGGACCCCGTTTTCAGAGTTCTCTAAAGACCATGTTCTTGATTCTCGGGGGATGAGTGGTGAAATTCTGTTGATGTGCGACACCCCAGCAACTTCCACCCCAAAGAAGCCACAGTTTGCCCTGTGCACACCACATTCTCCACTCCACCTCATACAAGAGGGCTGGTTCCAGGCCAACTGCTACCACAGAGATGGAACACCCATCGAGGTGCAGTATGACGTGCGGAGAGCGACTCTGGCCTGTGGAGATGTTATGTTCTGTGTGTGGCTGAGTGGAAGTCATCTTCTCCTGCAGCAGCAGGAGACGCTGCAGAGCACACGGTCCCCCACAGCAGAGTCATCAGTTCAGGACAACTCCGCTATCAGCCTGGGAGAGGCAATCAGTGAGGCAGCCCGTGGCGAGGGCCTGTGCTCCTCAGTGGACCTGGAGCAGTCTGGAGCGTGTGACGGACAGTTTGAGGAGGCCTACCAGCCACTGCGCACTGTGGGGAAAGGAGCGTTCGGCTTTGTGTGGCTTGCCTCGCGACGACATGATGGACAAGAGGTTGTGGTAAAGTTCATCAGGAAGAGCCGGGTGGTGACAGAATGTTGGGTGGATGATTCAGAGTTGGGTCTGATCACTCAGGAGATTGCCATACTTGCCCGACTAAGCCATCCCAATATTGTAAAGGTGATGGAGGTCTTTGAGAACGAGAGCTTCTTCCAGATGGTGATGGAGAAACATGGAGATGGTCTCGACCTGTTTGAGTTCATCGACATGCAGCCAAGGTTGGATGAGCCACTGGCCAGCTACATCTTCAGACAGTTGGTGTCAGCGGTGACCTATCTGCGTGGGAAAAGTGTGTTGCACAGAGACATTAAAGATGAGAACATCATCATAAACACACTTTTCCACATCAAGCTGATTGATTTTGGCTCTGCCACCACGCTGGAGCCAGGCAAGCTTTTCCACACGTTCTGTGGAACGCTGGAGTACTGCTCCCCTGAGGTTCTGCAGGGGAACCCGTATGAAGGACCAGAGCTGGAGATGTGGTCTTTAGGAGTGCTTCTGTATACACTGCTGTTTAGTGAGAACCCTTTCAGCACTGTGGAGGAGACCATACTTGCAAAACTCAACCCTCCCTGCAACATCTCTTCAGCAGGGGGTTGAACCACGAAGCAGGATTACAGGGTTAGCGAGCTAACTTTGAGTTCAGCCCTGACTTACCACAAACGTGGCTATCCTTTCAGCTGGGTAGGTCGCCATGGTAACATACTGGTTAAGTTGAAACTCAACACACTAAACTGGTTTAAATCCCTCCTCCTGTCCAATCTCAGAACAAGTACAACACCCACCATCTGGCCAATCACAGAGCGATTATAAAACCTACCTCTTGTTCAATCACTGAGCTTGGCTTTGATTGTATTGTATCATAGCGATATGtggaattaaatattaaatgttttaatgaaacatacaggggttggacaatgaaactg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113968 lncRNA upstream 75362 30070957 ~ 30072897 (+) True G84623
TU113939 lncRNA upstream 133079 29967550 ~ 30015180 (+) False LOC103025336
TU113940 lncRNA upstream 187047 29959375 ~ 29961212 (+) True G84597
TU113933 lncRNA upstream 215869 29931960 ~ 29932390 (+) True G84591
TU113884 lncRNA upstream 283425 29859460 ~ 29864834 (+) True G84558
TU114049 lncRNA downstream 17125 30185883 ~ 30243942 (+) True G84685
TU114051 lncRNA downstream 17125 30185883 ~ 30243942 (+) False G84685
TU114058 lncRNA downstream 50380 30219138 ~ 30224378 (+) True G84691
TU114059 lncRNA downstream 78698 30247456 ~ 30248237 (+) True G84692
TU114060 lncRNA downstream 80268 30249026 ~ 30249482 (+) True G84693
XM_015607907.2 mRNA upstream 133137 30012378 ~ 30015122 (+) True LOC103025336
XM_022673137.1 mRNA upstream 139331 29989786 ~ 30008928 (+) False LOC103038716
XM_007236376.3 mRNA downstream 4828 30173586 ~ 30179026 (+) True mterf4
XM_007236377.3 mRNA downstream 12162 30180920 ~ 30184812 (+) True LOC103030290
XM_007236380.2 mRNA downstream 20303 30189061 ~ 30190170 (+) True LOC103031974
XM_007236375.3 mRNA downstream 27959 30196717 ~ 30238525 (+) True LOC103029649
XM_022673143.1 mRNA downstream 89034 30257792 ~ 30327152 (+) True yeats2
LOC107197844 other upstream 1069361 29071891 ~ 29078898 (+) True LOC107197844
LOC111193135 other upstream 1104520 29043217 ~ 29043739 (+) True LOC111193135
LOC111193240 other upstream 1106652 29040979 ~ 29041607 (+) True LOC111193240
TU113562 other upstream 1123145 29004094 ~ 29025114 (+) False LOC103045392
LOC103045392 other upstream 1148153 28999502 ~ 29000106 (+) False LOC103045392
XR_002650381.1 other downstream 1286226 31454984 ~ 31462260 (+) False pnisr
TU114720 other downstream 1654828 31823586 ~ 31824388 (+) True G85189
XR_002650383.1 other downstream 2030425 32199183 ~ 32218762 (+) True LOC103035447
XR_002650384.1 other downstream 2030425 32199183 ~ 32215147 (+) False LOC103035447
XR_002650385.1 other downstream 2031133 32199891 ~ 32218762 (+) False LOC103035447

Expression Profile