RNA id: XM_022673165.1


Basic Information

Item Value
RNA id XM_022673165.1
length 1372
RNA type mRNA
GC content 0.49
exon number 8
gene id rpp40
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 30883308 ~ 30892684 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TAGGGGGCGGCAGGGGCGCGAGCGGGTCAAAAACACGGTTCAGCCGGCATGGTGAGCAGTGCTGTACTGTCAGTGTGTCTCCCCCCTGCTTtattataaattagtttttaataataacacaattaaACAGAGTAAGATGAGcccggagctggagcagtgcCCGCGGAGTCTGTTAGTGTGTGAAAAAGGAAACTTCAAAAATGAGAAATCCCGCCATGAATCCCAGGCGCTGAAACACAGCTTTAACTGCAGGaTTTCCTTATTGATACCTGAGTGTGGAAGACTGCCTGTGATGCTGGAGAAAGTACTTAGTAATTTCAGCTCATATTTCCATGTCCAAGACTTTCCAGTTTCTACATTCCTGGAAGAGAAATGGCTGGATGCAGTGAAGAAAGGAGGTTTCTATGCACTGTCTTCCAAAACCAGAATTGATGAGGACAATGTTGTTGCTGTTTTGCCCAGCGgTCAGCTGATCTTGTCTCTGGATAAGGACACATATGAGCAGCTGGGCCTGGAAGGAAGACCTTCCCAATACAGTCACAGAAAGACCGTCAGACACAttgtTACTGTGGATCTTAAATCTTTGGTTCTGGGCACGAAGAAATATCAGCGGGTTCTGCTGTGTCTGAAAGAGAGAGTTCCACTGAAAACCGACTTCCTCTTTACAGGTGGAGCTGTATCTCTCCTGGACCTGCTGTCGAAGCAGTTGTATGAGGAGTGTAGACCTGCTCTCCACTGCCGGACTCTGCAGGACCTCCTGTGCCCCTCGCTCATCCCCTCTGACCTGAAGGGGGAGAGCGGTTCTGTCACGCCGACCCAGTTCCTGGAGTGGCTGGGGGCGGTCAGTCTCAGTATCAGCTGTGATAATCAGGCGACCAGTTTCCTGTCCACCTACGCGTGTCCAGAGCCTCAGAGCTCGGTCAGTCAGGCTCTGCTGTGCACAGTGACCGGCCTCATCTCCCCGCAGGACGTCTGCAAACTGCTGACAGAAATCAGACGTTATCTGGATGAGCCGAAGTTGACGAGTTGGGTCTCGCTGACGGTACACGGCTGTGCAGACAGTCCTGTGTCCTGGGGATCAGCGGAACATGGGTTCCACAAAGGTGGAGAAAACTTCTACAACTTCGTTTGCTTCCAGAACCAAGACTACTGGTTACATATGGCTACTGGAGCAAAAGACGCCTGTCCACCTTGATGAACTGGACTTGGCCTGAAGGGGGAAAAAACAGAcataaatttttattttgaataaatcTCATTTAGAGACTCactgtttagttttgttgctTTCGAGCTGTTTCTGTACATACGGTTTGTGTTTGCTTTTCTGCAGCTCATTAAGTTGATTCATTAATTAAACCTAATGCAAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114307 lncRNA upstream 77566 30805201 ~ 30805742 (+) True G84877
TU114297 lncRNA upstream 112225 30770601 ~ 30771083 (+) True G84870
TU114274 lncRNA upstream 176125 30704476 ~ 30707183 (+) False G84858
TU114276 lncRNA upstream 176125 30704476 ~ 30707183 (+) True G84858
TU114245 lncRNA upstream 194147 30686920 ~ 30689161 (+) True G84831
TU114354 lncRNA downstream 5235 30897919 ~ 30899179 (+) True G84906
TU114313 lncRNA downstream 20199 30912883 ~ 30922290 (+) True G84881
TU114314 lncRNA downstream 20199 30912883 ~ 30915338 (+) False G84881
TU114481 lncRNA downstream 157726 31050410 ~ 31050652 (+) True G84997
TU114482 lncRNA downstream 158143 31050827 ~ 31051026 (+) True G84998
XM_015600849.2 mRNA upstream 136445 30713610 ~ 30746863 (+) False LOC103037625
XM_007231650.3 mRNA downstream 30285 30922969 ~ 30938428 (+) True LOC103044961
XM_007231651.3 mRNA downstream 49992 30942676 ~ 30991541 (+) True znf407
XM_015600856.2 mRNA downstream 137327 31030011 ~ 31049206 (+) True tshz1
XM_022673168.1 mRNA downstream 260925 31153609 ~ 31238682 (+) True znf236
XM_022673169.1 mRNA downstream 260925 31153609 ~ 31238682 (+) False znf236
LOC107197844 other upstream 1804410 29071891 ~ 29078898 (+) True LOC107197844
LOC111193135 other upstream 1839569 29043217 ~ 29043739 (+) True LOC111193135
LOC111193240 other upstream 1841701 29040979 ~ 29041607 (+) True LOC111193240
TU113562 other upstream 1858194 29004094 ~ 29025114 (+) False LOC103045392
LOC103045392 other upstream 1883202 28999502 ~ 29000106 (+) False LOC103045392
XR_002650381.1 other downstream 562300 31454984 ~ 31462260 (+) False pnisr
TU114720 other downstream 930902 31823586 ~ 31824388 (+) True G85189
XR_002650383.1 other downstream 1306499 32199183 ~ 32218762 (+) True LOC103035447
XR_002650384.1 other downstream 1306499 32199183 ~ 32215147 (+) False LOC103035447
XR_002650385.1 other downstream 1307207 32199891 ~ 32218762 (+) False LOC103035447

Expression Profile