RNA id: XM_022673187.1


Basic Information

Item Value
RNA id XM_022673187.1
length 5779
RNA type mRNA
GC content 0.53
exon number 26
gene id LOC103035585
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 32729119 ~ 32923000 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCGGCGTTCCTCTGCAATCTCTCTGAGCTCAGAGCTCGTCCACCGAGAGCCTGAAGAGCCAGAGCGTCCACCTCCGGCCCTGACAGCCCCCCGACATCAGGGCATGCGCGACACCGCCGGACACAGTGACCACAAAATGGCCGAGGGGCAAGGCCTGGTCTCGGGAGGCCAGGCTTCACCCCCCGCCGGCTCTCCCGAGACAGCGGCCGAGCTGAGCAGGGCGGAAGAGGGTCTCGCAGGCCCTTCCCTGACCCCGTCCGGAGGGGGACGGGCTCTCTGCCGCCCCTGCTGCCTGATTCTGATGCTGATCTTGCTGCTCCTCTCTTTCCTTGGCAGCTGGGCGGTGGTGCACCTCAGCCTGGGGTCCAGGGACAAGCCCTTCCGGATCTCATCCAGTTACGACCAGCCCGGAGAGCAGGAGACCGCCACCTACGACCCCCTCTTCATCACCAACTGCACCATGGAGACCTCTCGAAATGTCACCCTGGAGGGCCACTACCACTGCAGAGAGGGTCAAGATATCAGCCTGGGCCAGCTGTGTGACTTCACTCCTGATTGTCCGCAGGGGGATGACGAGGGCGAGGCATGCCGTCAGTTCCTCAATGGCAGCTACTGCTCTTTTGAAGACGGTGATTGTGGATGGCAGCTAGTGTCAGGCAGAAGTCCCTACAAGGTGGTCTATCCCTTCCTACCCAAAGGGCTGCGGAGCACATGTCCATCATCAGGAGCTGTTTTGGCTGTAGAAAGTCAATCCAAAGGTCAACGGGGGTCAGTAGTCGTGCGGAGTCCACTCTTCCTCTACCCTCTGAGGAACGCTCCGTGCATGGTCCAGTTCCAGGTGTGCGGGAACACGAGAGGTGCTCTGTCTCTCTGGATCATAGAGAACAGCACAGGACTTGATGGCCAAAGAAGTCTATGGAACTCTAGCAGCGAAGCCACGCTAGACAAAGGCTGGAGGTTCATCACGTTTCCTTTATTTGGATTGGTCGACTCGTTCTACCTCCAGTTCGTTGCAGACATCTCTCCTGACTCCGACGCTGCATTTGCGGTGGATAATTTCACTCTCAGCATGAACTGCTTCCTCGCAAcTAATGGAGAATTCCCTCCAGTGGTTCCAACAAGTCCAGCAGAAGGGAAGTTCAGACCCACGAGTCCAATCAGGACCACCTCAACAGCAGGTGGAGGCTCAGGAGCTCTGTCCCTGCCGCCCACGCCAGCAGACTccATGAAATGGTTTTTCCACCCTTGTGGGGCCTCAGGACCAGAAGGCCCTACCCCTTCTCAGTGTGCCAATGCCTACCGTAACGCCAACGTGAACGTGACTGTGGGGACGAAAGGAGTGCTGAGGGGCATTCAGATGTGGAGGGTTCCAGAAACTGGAATTTACAGGATCACGGCTTACGGTGCGGCAGGTGGACGCAGTGTTCTGAGCACGCTCAGATCGCATGGCGTCTACATCACAGCAGACTTCAAGCTGCTGAAAGACGAGGTGCTGTTCATCCTTGTGGGACAGAAGGGAGAAGACGCGTGTCCCAGAGCTGCGGAGCCTCTGAGGCAGGTTTGTCTGGATCAGAAAGGCCCTCCGAACAGCACCAGCATGCTCAGAGggggagcaggaggaggaggcggggcTACCTACATTTTTAAGGTGGAGAACGGAGTGTATGTTCCTCTGCTCATCGCTGCTGGAGGTGGAGGTCGAGGCTACAGCAGTCACTCAGAGAACCAAGAGGAGGACGTGGAGCATGACCCCAGCGTCCCCGGCCGCAACGGTATTTCAGGAGCTGCTGGTGGTGGTGGAGGCTGGAACGACAGCGCTCCTAAAACTCAGGGTGGACGTCCGCTGGTTCTTGGAGGTCAGGGAGGAGAGCCGTGTGATACTCAGGGCTGGAAGACCCACGGGGGCTTCGGGGGAGGTGGAGGAGCCTGTAccagtggaggaggaggaggaggctaCAGAGGTGGCGGTGCTTCAGCAAACAATGACCCTGAACAGGATGGAGAGGATGGAATCTCTTTTATTAGCCCTGATGGAGAGATATTTATGGATGCACTCAAAGCCATGGAGGGTGACGGTGAAGTGATCATTAACCCGGTACAGAACTGCAGTCACTGTGAGTCGGGAGAGTGCCGCGAGACGTTAGAGGGAACGGAGTGTTACTGTGATGAAGGTCTTGTCTTGGCCAGTGATGGAGTGCTCTGCCTCAACGCTACAGAGATTTCTCTGCTGCAtccgccctctctctctcacctggcTCTGGGGCTGTCTGTGGGCACCTCTGCACTCATCGCCGCTCTGCTGCTGGCCGTGTCCGGAGTCATGATCATGTACAGACGCAAGCACACCGAGCTGCAGTCCATTCAGCTGGAGCTGCAGAGTCCAGACTGCAAGCTGAGTAAACTGAGAGCATCCACCATCATGACCGATTATAACCCAAACTACTGCTTCGCTGGAAAGGCGGCATCTGTGAACGACCTGAAGGAGGTTCCCCGCCGCAACATCTCTCTGACCAGGGGTTTGGGGCATGGAGCTTTTGGAGAGGTCTATGAGGGTCTGGCAGTTGGAATACCAGGTGAACCCAGTCCCATGCAGGTAGCAGTGAAGACGCTCCCTGAAGTGTGTTCTGAGCAGGATGAACTGGACTTTCTGATGGAAGCTCTCATAATCAGTAAGTTCAGCCATCAGAACATAGTGCGGTGTATAGGCGTGAGTTTACAGGCTCTGCCACGCTTCATTCTGCTGGAGCTGATGGCTGGAGGAGACCTCAAGAGCTTCCTTAGGGAGACGAGACCCAGACTGGAGCATCCCTCCAGCCTCACCATGGTGGACCTTCTCAATATAGCGAAAGACATAGCACGTGGCTGCCAGTACCTAGAAGAGAACCAGTTCATTCACAGGGACATTGCAGCAAGGAATTGCCTGCTCACCTGTAAAGGCCCTGGAAGAGTGGCCAAAATCGGAGACTTTGGGATGGCCAGAGACATCTACAGAGCCAGTTACTACAGAAAAGGGGGTCGCGCCATGCTGCCTGTGAAGTGGATGCCTCCCGAGGCTTTCATGGAAGGAATTTTTACCTCCAAAACTGACACATGGTCTTTCGGAGTGTTGCTGTGGGAGATTTTCTCTCTGGGTTACATGCCCTACCCCAGCCGCAGTAATCAGGAGGTCCTTGAGTTTGTCACTAATGGAGGCAGGATGGACCCTCCACAGAACTGCCCTGGTCCAGTATATCGGATAATGACGCAGAGCTGGCAACACCAACCTGAAGACAGGCCAAACTTCTCCACCATCCTTGAGAGAATTGACTACTGTTTGCAGGATCCAGACGTGGTGAACGTGCCACTGCCGGTGGAGTATGGCCCCGTGcccgaggaggaggagagggtaCCCATGCGTCCAGAGGATCCCGCCGCTGCCTCTCTGCTCGTGGCCCCTCAGGGCGGGGAGGAGGCTGCAGCTTCCGCCCCCTCGTCCCGCTCTGAGGAAGCCAAGAGGGCTGCTGAGGCTCTGTTGATGGGTGGCCACCTTGCTGATGGCAAgcctggagctggagctgtacCTGTACCTGGAGCTTTACCAGGACCTGGAGCTGCTACATCTCAGCCCCACCCGCACCCGCAGGTGGCATCAGTACCTGGGCAGCTGGCATGCAACAAGACTACTGTTGTGCCCACCTCATCCCAGGATGGAGGCCACGTAAACCTGGGCTTCACTCAAGGCCACCCTGGTGAGAAGGAAAGCCGCAATGGGAAGCCTACTAACCTTTGGAACCCTACTTATGGATCATGgttcctccagcagcagcagaagcgaCAGCAGGCTCAAGCTCAGGCTCAGGCTCAGGCTCAAGCTCAAGCCCAAGCTCAAGCTCAAGCTCAAGCTCAAGCTCAAAGGCAGGCCCAGCAGCGACTCCCAGCTGAAGGTCAGGAGCACTCGGGCAGGACTGTGACAGTGGCCGAGGCTCTGGGCCTGCAGCACCAGCAcaagcagcaacagcagcagtaccagcagcagatccagatccagcaccagcagcagcaacagcaacagcagcaacaacaacaaggCCTCTGCAGGCCTCTATTACCCCCTCCTCCCCCACCTGCCCCCGCCCCCTTACTGCTGGATTCAGCAGCCTTGCCTCCAGTCCCGCTCTACAGACTTCGCCGCTTCCCCTGCGGCAACATCGGCTATGGATACCAGGAGCAAGGCCTGCCCCTGGAGCCCCCCATGCCCCTGTCCATGTCCGTACCGGGGCCGCAGGTCATCGGTGGCCAGCCGCCACCCCCTCCCCCCGGCCAACACCCCCAGCTCCCCGGCCAGCAGAGACCGATCTCGCTGGCTCGGCCCGGCGGCCCGGAGGACAGCCGCTCCCTGCTGGTGACCATGGGGACAGTGCAGGACTCCAGACTCCCAAAAATGGAAGGGCACAACGCCACAGTGCTTTAACCCCCTCTCCCTCAGTGCCCACTCGAGAAAACACTGTGCCATCCTGTCTGTGCCCACCTCAGCTCACCGCCATGCTTTTCAGCCACGGCAACGTTATCCCCTTCCCTCACTATGATGTCCGGGATCGACCCTGACTGTTTTATTATCCTATCGTCCTCAGCAGAGGCGCTCAGCGCTGGGTAAAGCTTTACATGAAGCGAGGCGAGATCAGCAttcggggaaaaaaaacactttacgtGAAGACTGCAGgacatttactgtatgtaacTTACTGTTACTAAGCTCATGCTTAGTACCTGAGTGAAACCGTAACTGTGGAATAGCATCATACGGTGAAACAAGgcttcagcagccagagtcagagagagccaTATATTaaattggccttgctcactTTACTAGTGCATTACTAGTGCATTGACTGCCTAGTAATTCGTTAATGGTGGCAGTTTCTAAAGAAGTAGTggattactttttaattttttttaacatatcgaAGGAAGCATGCACTTGTTCTTAGTGTCAGAAGCACTGCAATTGATTGACTGCAGGGATTAGGTTAATTGGCTcaaattaaagcaaagaaattaaactgtaaatcaaaataaaagcctttttaTTATAAATGGAAATTGAATGTttcaacaaacaaactaaaacaaggATATTAATCTAtaagtcaaaataaaagcccacTTTTTAATAACTGAAAAAAGGAGGCAACTAAGTGGCCATTTTTTCTTACCCTCTTCTCAGAGGCAggtcataatattttttaactgtaacatCCTGTCTCTTCATTTTAGCAAATCTTATTTTGCATTTGCAATATGCAAACTCTAATATGCTTTCAACCCAACAAATACAAAGGTTAAAACATGTTGAAAACAAACAGAGCACAAACACATTAAGGCTTGTTCCAATTCGCTGTGCAATTATGAAACTATTAAGCGGTTATTAAAATGTCTGAGCTGAAAATAAAGGCTTGTTTTAGAGATGTGCTCAAAAATAAGCAGAAACGCTCTTCCACTCCTGTGGCCATTCAGGTACAacaccattaataaacactgaAGAGCTCACCACTTCAGcttcagagttaaaaaaacaaatatttcagaGAAAAGGaggctatattttatataaggtCTAAATAATGCCCATGGACATCTTTAACTGTTGAGGCGTATTATTATTCAGGTCAATAAtcatatgtttattatattagaaTTACTACACATTTCCCGAAATTTTATTTAACTAATATCTAAAGTATAATTGACAAGCAGCAAACAAGCAGCATAATTTCAGCATAATCTCAGTAAAGTAGAT

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function

KEGG:

id description
K05119 ALK, CD246; anaplastic lymphoma kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115071 lncRNA upstream 183734 32545112 ~ 32545385 (+) True G85438
TU115050 lncRNA upstream 236680 32492160 ~ 32492439 (+) True G85418
TU114986 lncRNA upstream 239206 32452690 ~ 32489913 (+) True G85377
TU114978 lncRNA upstream 260026 32444931 ~ 32469093 (+) False G85371
TU114979 lncRNA upstream 260026 32444931 ~ 32469093 (+) True G85371
TU115075 lncRNA downstream 56 32923056 ~ 32925758 (+) True G85442
TU115094 lncRNA downstream 12238 32935238 ~ 32938633 (+) True G85461
TU115124 lncRNA downstream 121771 33044771 ~ 33045175 (+) True G85486
TU115140 lncRNA downstream 190197 33113197 ~ 33113650 (+) True G85502
TU115153 lncRNA downstream 386566 33309566 ~ 33357314 (+) True G85515
XM_007230958.2 mRNA upstream 287801 32436217 ~ 32441318 (+) True LOC103037843
XM_007230960.3 mRNA upstream 298854 32427026 ~ 32430265 (+) True LOC103038371
XM_007230962.2 mRNA upstream 303807 32420132 ~ 32425312 (+) True LOC103038892
XM_022673183.1 mRNA upstream 510357 32199188 ~ 32218762 (+) False LOC103035447
XM_022673184.1 mRNA upstream 510357 32199189 ~ 32218762 (+) False LOC103035447
XM_007257446.3 mRNA downstream 119845 33042845 ~ 33057697 (+) True LOC103035281
XM_007257287.2 mRNA downstream 138183 33061183 ~ 33071966 (+) True c9h2orf71
XM_007247681.3 mRNA downstream 908270 33831270 ~ 33849509 (+) True slc4a1ap
XM_022673194.1 mRNA downstream 1089757 34012757 ~ 34183355 (+) True babam2
XM_022673193.1 mRNA downstream 1089762 34012762 ~ 34183355 (+) False babam2
TU114974 other upstream 287803 32436232 ~ 32441316 (+) False LOC103037843
TU114975 other upstream 287803 32436232 ~ 32441316 (+) False LOC103037843
XR_002650383.1 other upstream 510357 32199183 ~ 32218762 (+) True LOC103035447
XR_002650385.1 other upstream 510357 32199891 ~ 32218762 (+) False LOC103035447
XR_002650384.1 other upstream 513972 32199183 ~ 32215147 (+) False LOC103035447
TU115452 other downstream 1823814 34746814 ~ 34800377 (+) True G85740
TU115579 other downstream 2398512 35321512 ~ 35339831 (+) True tfb1m
TU115713 other downstream 2713827 35636827 ~ 35658087 (+) True LOC111193254
trnat-ugu_82 other downstream 4675177 37598177 ~ 37598249 (+) True trnat-ugu_82
TU116491 other downstream 5742167 38665167 ~ 38698313 (+) True G86497

Expression Profile