RNA id: XM_022673197.1


Basic Information

Item Value
RNA id XM_022673197.1
length 3697
RNA type mRNA
GC content 0.47
exon number 11
gene id mocs1
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 34243119 ~ 34264685 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAGTTGATCTGCTGAGGAGCTTCAGATGGGGAGAGTGATGATAAGCTCCGGGTCAGAGCTGAGCCGGGGAGTCCTGCACTGATATGGCCCTCCACAGCGGCCTGTGCTCCCGGCTTATCTACAGCACGCACCCCGCCCAGGCCCTGCGGACCGCGGCCAACACGCTGCAGTGCTTCCGCTACTCCGGCAGAACCAAAGAGGAGAACCAGAGACATGCAGCTTACCCTGAGATACCAGAGAGACCCCAGCCTGAGCAGGAATTAGTTGTAGCACGTGGTCGCAGGAGAGTTCTGAAGGACGTCTTGCCTTTCTCAGAATTCCTCACTGATTCTTTTGGACGAAGACACAGCTATCTGCGAATATCTCTTACAGAAAAATGCAACCTGCGCTGTCAGTACTGTATGCCAGAGGAGGGGGTGAAACTGACTCCGAGAGGGCAGCTCTTGACCACAGAGGAGGTGCTGACTCTGGCTCGGCTCTTTGTGAGAGAGGGGGTGGAGAAGATCCGCCTGACTGGAGGAGAGCCACTTATCCGCCCTGATGTTCTCCACATTATCACGGAAATGAGGAAGTTGGAAGGTCTGAAGACGATTGCTGTAACTACTAATGGCATGAACCTCGCCAGACTGTTGCCGGGTCTGAAGAAGGCGGGAGTGGACCTGCTCAACGTCAGTCTGGACTCTTTGGTGCCGGCCAAGTTTGAGTTCATAGTTAGACGTAAAGGGTTCCATAAGGTGATGGAAGGGATTGACAAGGCTATTAAAATGGGTTACAACCCAGTTAagGTGAACTGTGTGGTAATGAGAGGCCTGAATGAAGATGAGCTGTTGGATTTTGTGGCTCTGACTGAGAGGAAGCCTCTGGATGTGCGCTTTATtgagtacatgccttttgatgGCAACAAGTGGAACTTTAAGAAGATGGTGAGCTATGCGGAGATGCTGGATCGCATTAAGCAGCAGTGGCCCAGTCTGGAGACGCTTCCTGGGGACGAGACGGGCACAGCCAAGgCATTCAGAGTACCAGGGTTTCAAGGGCAGCTGGGATTCATCACCTCCATGTCAGACCATTTCTGTGGCTCCTGCAACCGTCTGCGCATCACTGCTGATGGCAACTTAAAGGTGTGTTTGTTTGGGAACTCTGAAGTGTCTCTGAGAGACTGTCTGCGCTCTGGTGCGTCGGATGAGGAGCTGCTGCAGATTATAGGAGCTGCAGTGGGGAGGAAAAAGAAGCAGCATGCAGGCATGTTCAATATATCCCAGATGAAGAACAGGCCGATGATCCTCATTGCTGGAGAATGCAGTCAGCCTGTGCCAGAGTTAAGAGGCGAGCGAAGGGATCATCCTCTCTCCACTCCTAGCATGGCTCTCTCTGGCCCAGTAGCACCCCAGGTGCCACGTTCTCCAAGACCCCACAACCTTCTACACTGGAGtagccaagatagcgatgactTTACTAACAGCACCTTTGCAACAGATGATTTTTACTCTACAAACTCTTCTAAAATCTCTTCTCAAACTGACACGGCGGTAAAGATTTACCATGCCCATCTGGGAAGGTGCCAGCCTGTCCCTGGAGTATTAAGAAATGATGCAAGGACAGTTTTTGATTATCAATATGTTTCTGAAACACGCACAGAGAAGTTGTTTGCACAGCTGAGATACGCACACAGACCTGTAGACCGTCTCAGACCGACGTCACTGAGGGGTCTATGTTCCCACAGCAGCATACTAGGATGCTTCAAACCAAGGCAGCAGAACATTAGGAAGTGTCACCACCAAAGTGGTGGTGGTCCTGACAGTTCTGATGGTCCTGAAAACCCCCAGTTCCCAAACCAAGATCAAACTTCTGATCATTTAACCCACACTGATGCACAGGGCAAAGCCACAATGGTCAATGTTGGAGATAAAGCAGTGACTCGCCGCACAGCCACAGCCAGTGCTCGGGTCATCCTCGGCCCTAAAGCTTTCAAGCTGGTTCGTGCCAACCAGCTTTCCAAGGGTGATGCTTTAGCCGTGGCTCAGCTAGCAGGCATCATGGGTGCTAAGCAGACGTCTTCTCTAATTCCTCTATGCCACCCTCTGCCCCTGGACCACGCCACCGTCACTATGGAGCTGCAGGAGGAAGGGCATTTGGCCATGGTTATGGCGACATGCCAGACCACAGGCCGTACGGGGGTGGAGATGGAGGCGCTGACAGCAGTAAGCGTAGCAGCCCTGGCTCTTTACGACATGTGCAAAGCAGTCAGTCGTGACATCGTTATTACTGACATCAAGCTGCTCAGCAAAACAGGAGGACAGAGAGGAGACTTTCAGCGCACCAGCTAAACTAGCGGCTAAGCTAGCATCTACACCAAACTACAAAACATCCATGAATGTTCTTCAGTGTGGCTACATGTACTTTCCTCAAAGTGTTACAAAGCTAAGCTGATACAGCTCCCCTTACCAATGCTCTTACTGACGTCTTCATCGTGCCTTTgggctatgttcacacagcaggtgaagGTAAATTGGTGGCCcagatacagtttttttttttttttttgtcgtcaTATTTAACACATATTATTGTTTGTTATGTGTGGCTGTGTGAAAAGCAAACAACACATTAAATCGGACATTTTCAATtctgatttgggccactttttgAATTTTTATGTACTGAAAACCCATTATGTATTGAAACCCAGTATATATTTTGTAGGTATGTGACTCATCCTGAACAGCTGCACTGAAAATTACTGTGACGTTTATGCtaggaataataaaaaaaataggtgcGAGTAGACGGAGACATGGACGACAGCGGCTCCATTTGAAAATTAAGTTTGATCTCTTAATCAAACAAATTTGTAACATCAATGCATGCAAtcacaataaataatacaaactaaagTGCAAGTAaccttgaaataaaaatattgaaaatatataattcaatATAGCAGCTTTGCTCCAGCATTAGGTTGGGCATTTGCAATGTATTATGTAAATTtcttgtattatattacttgatATCTAGTTAAGCTAGTTACTGCTGTGAAGAGAACAGTTGAGAACAGAGGAAAGACCCTATGACAGCATGGAAAGACCGCTGACAAGAGGGAATAGACCCTAACGGTGCTGCCATGGGCTAGCAATCCGTGGTAGCAGCCACCATGGTTAACCATGTGTGTGCAACCATGCAAGCTacattgagaaagagaaaagcaaTACCCcaggagtccgagagagcaggGTCTcaagcactttgtgtaatgtattGCAGTTTCAACGTAAAGCATTACTCTCCTGAATATGTGCAGCAGTTTAGGAGTGAACTGTTCAGGCTAATATTGGATATAGCTCTGATTTTAAACGATGGTGTAAACAGCCTAAAATAAAACGTCTGCTTTTAAATATGGTGAGAAAATCACCttctgtgtgaatgtagcctcAGAAACCCTCACCAGTGTATTCCTACCTGTATTCATGTATTTGCAGCTGACTGCATTTGCAGCTGACTGAAACAAACACTGCCCTGAATAACTGGACTGATTTAATGGAGGAGTTTCTATGTACTGAACTGAGAATATCCATAGAAACAGGGTAAAACTCTTTTGTGCTGTGAGTATGTTTTGATAATGTTAAAGGGGAGTTTCACTAATATTTCCAAATTCCTTTGTAATTAAATCAGTAAACAAATCATTTACCCAAAA

Function

GO: NA

KEGG:

id description
K20967 MOCS1; GTP 3',8-cyclase / cyclic pyranopterin monophosphate synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115250 lncRNA upstream 289746 33854317 ~ 33953373 (+) True G85591
TU115268 lncRNA upstream 293853 33946197 ~ 33949266 (+) False G85602
TU115266 lncRNA upstream 293853 33946327 ~ 33949266 (+) True G85602
TU115260 lncRNA upstream 313994 33926162 ~ 33929125 (+) True LOC111193250
XR_002650388.1 lncRNA upstream 314851 33926869 ~ 33928268 (+) False LOC111193250
XR_002650390.1 lncRNA downstream 7247 34271932 ~ 34284284 (+) False LOC111193252
TU115351 lncRNA downstream 7337 34272022 ~ 34285239 (+) False LOC111193252
TU115354 lncRNA downstream 7337 34272022 ~ 34319416 (+) True LOC111193252
TU115400 lncRNA downstream 218894 34483579 ~ 34517443 (+) True G85700
TU115410 lncRNA downstream 311162 34575847 ~ 34576218 (+) True G85710
XM_007248446.3 mRNA upstream 16339 34212417 ~ 34226780 (+) True fosl2
XM_007248447.3 mRNA upstream 16339 34212417 ~ 34226780 (+) False fosl2
XM_022673194.1 mRNA upstream 59764 34012757 ~ 34183355 (+) True babam2
XM_022673193.1 mRNA upstream 59764 34012762 ~ 34183355 (+) False babam2
XM_007247681.3 mRNA upstream 393610 33831270 ~ 33849509 (+) True slc4a1ap
XM_022673202.1 mRNA downstream 34038 34298723 ~ 34301134 (+) True LOC111193251
XM_022672506.1 mRNA downstream 229140 34493825 ~ 34633946 (+) True kif6
XM_007248490.3 mRNA downstream 373154 34637839 ~ 34643223 (+) True LOC103040539
XM_007248491.2 mRNA downstream 383379 34648064 ~ 34660780 (+) True LOC103040842
XM_007248450.3 mRNA downstream 440353 34705038 ~ 34735575 (+) True kcnk5
TU114974 other upstream 1801803 32436232 ~ 32441316 (+) False LOC103037843
TU114975 other upstream 1801803 32436232 ~ 32441316 (+) False LOC103037843
XR_002650383.1 other upstream 2024357 32199183 ~ 32218762 (+) True LOC103035447
TU115452 other downstream 482129 34746814 ~ 34800377 (+) True G85740
TU115579 other downstream 1056827 35321512 ~ 35339831 (+) True tfb1m
TU115713 other downstream 1372142 35636827 ~ 35658087 (+) True LOC111193254
trnat-ugu_82 other downstream 3333492 37598177 ~ 37598249 (+) True trnat-ugu_82
TU116491 other downstream 4400482 38665167 ~ 38698313 (+) True G86497

Expression Profile