RNA id: XR_002650283.1


Basic Information

Item Value
RNA id XR_002650283.1
length 508
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id LOC111193141
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 22393995 ~ 22409035 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCTAACTGTGTATCCGAGATGAATTAATAGTTGATGTTTAATAGCAGGCGGacggcgctgtgctggttagataagtaggtCATGGGGTTTGATATGATAGGTGGTTTATGGCTTTAGTTCACCCCAGTCTTTAGTTATTTACCGCAAAACACCAGAGTACAGCTAGCGGCTCAGTGCTAGCTAACAGCCGAACTCAGCAATAAGGATTGGAGGGTGTTAGCCTGGATGCTAACTGAATTTATTGAGCTTAATTTATCGGGTGGTGTTTGATATCAGCGTGGTGTCACTGTGCTGGTTGATATGGGAAGTTCTGCTGTTTGAACAGACATCATACACATATCAGACAATTACTCTGGTCTTCAGGTTTGAAGgtgAGAAGAGAACACTGAAGATTCTGCTTTGGATAAGAAGGCCAGACCTCCCTCTGggCTGTAGCTAAGGAGGTGTGCAGGATTTGACGTGCCGATGTCTACTGCTTGACAAACACAGCTTGAGGGGTAAGAGAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111186 lncRNA upstream 25039 22366240 ~ 22368956 (+) True G82493
TU111178 lncRNA upstream 37909 22355641 ~ 22356086 (+) True G82487
TU111167 lncRNA upstream 108654 22285063 ~ 22285341 (+) True G82476
TU111156 lncRNA upstream 159104 22234503 ~ 22234891 (+) True G82465
TU111124 lncRNA upstream 252279 22138496 ~ 22141716 (+) True G82438
TU111213 lncRNA downstream 140830 22549865 ~ 22551789 (+) True G82515
TU111288 lncRNA downstream 718918 23127953 ~ 23194290 (+) True G82579
TU111292 lncRNA downstream 754978 23164013 ~ 23165063 (+) True G82583
TU111297 lncRNA downstream 795780 23204815 ~ 23205444 (+) True G82588
TU111308 lncRNA downstream 799460 23208495 ~ 23208799 (+) True G82596
XM_007253795.3 mRNA upstream 258698 22130946 ~ 22135297 (+) True tmem179
XM_015607013.2 mRNA upstream 265854 22111114 ~ 22128141 (+) True LOC103041179
XM_015607014.2 mRNA upstream 265854 22111114 ~ 22128141 (+) False LOC103041179
XM_007253796.3 mRNA upstream 290344 22081687 ~ 22103651 (+) True ubr1
XM_007253811.3 mRNA upstream 338584 22047619 ~ 22055411 (+) True exd2
XM_007253788.3 mRNA downstream 182534 22591569 ~ 22594357 (+) True LOC103037751
XM_022672482.1 mRNA downstream 218269 22627304 ~ 22637793 (+) True edrf1
XM_022672943.1 mRNA downstream 229698 22638733 ~ 22663127 (+) True tonsl
XM_007253783.3 mRNA downstream 277696 22686731 ~ 22692160 (+) True LOC103036290
XM_007253777.3 mRNA downstream 302047 22711082 ~ 22844378 (+) True akap6
TU111179 other upstream 35860 22357644 ~ 22358135 (+) True G82488
TU110179 other upstream 2720357 19673127 ~ 19673638 (+) True G81763
TU110177 other upstream 2727948 19665736 ~ 19666047 (+) True G81761
TU110107 other upstream 3463241 18930238 ~ 18930754 (+) True G81704
XR_002650340.1 other upstream 3873048 18511622 ~ 18520947 (+) False LOC103033848
TU111323 other downstream 821395 23230430 ~ 23231318 (+) True G82609
TU111569 other downstream 1466404 23875439 ~ 23877767 (+) False timm9
TU111570 other downstream 1466404 23875439 ~ 23877767 (+) True timm9
TU111581 other downstream 1500647 23909682 ~ 23920698 (+) True G82811
TU111651 other downstream 1730354 24139389 ~ 24142232 (+) True G82853

Expression Profile