RNA id: XR_002650303.1



Basic Information


Item Value
RNA id XR_002650303.1
length 656
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id LOC111193172
representative True

Chromosome Information


Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 4278111 ~ 4286231 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


gctgctgcttctgctgcttctgGAGCAGCGGGGATGAGAGGACAGAAGACAGGAGGGGTACCACTGGGCGGGGCAACCTGTTAAGGATGGACGCCAACAACCAATCATATTGCACGGGGGCGGAGTTTGCCCGAACACAGCTGAACTCTTCTACTCCACCGGCTTCGGTTTCTGTGGTAGAAACCACATATCAGCAGAAGAAGCCTTGAATGGAGGAATCTCTGGAGATTCGAGGGCGGAGGTGGTGAAGCTCAACAACAGAGAGTCAGCAACTCATTACTGCAGAAATGCAGCACCCAGAGCAGCCGAATCAAGACATCACACAGCTCCTCAGCAGCTCCAGCAATCAATTATTTATCACATTGGACCTCAGCATTAAGAGCAaagtctctcttctctcacgaGTATGAATTATCTTTCGGGTTCCGGTATGTAGAGAATGCGTCTATACAATGCAGTCATGATAGTCAAAAAGAGAGTGATATCATTTAAAATAGTCTATACCCACTTTTTAAGGTATAAATACAGTGGTGCATAAACGTTTGTGCATAAATAGGACCTAAAACATCAGCAAATTTCCTATtagtaaattttaaaaaattacatttatttattgaggacaATAATCCCATgttacatatttgtgagtggcaaac

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU105273 lncRNA upstream 118794 4158517 ~ 4159317 (+) True G78066
TU105276 lncRNA upstream 120246 4154743 ~ 4157865 (+) True G78068
TU105267 lncRNA upstream 163735 4081395 ~ 4114376 (+) True G78060
TU105266 lncRNA upstream 173236 4045437 ~ 4104875 (+) True G78059
TU105265 lncRNA upstream 173658 4045437 ~ 4104453 (+) False G78059
TU105335 lncRNA downstream 31823 4318054 ~ 4320327 (+) True G78117
TU105341 lncRNA downstream 65222 4351453 ~ 4353277 (+) True G78122
TU105402 lncRNA downstream 191635 4477866 ~ 4490654 (+) True G78172
TU105536 lncRNA downstream 918851 5205082 ~ 5207413 (+) True G78283
TU105535 lncRNA downstream 1006524 5292755 ~ 5294206 (+) True G78282
XM_007257898.3 mRNA upstream 266853 4007515 ~ 4011258 (+) True LOC103044683
XM_007257903.3 mRNA upstream 362334 3907898 ~ 3915777 (+) True ap4s1
XM_007257912.3 mRNA upstream 398793 3868553 ~ 3879318 (+) True coch
XM_022672611.1 mRNA upstream 419656 3853606 ~ 3858455 (+) True LOC103022404
XM_022672610.1 mRNA upstream 424987 3825628 ~ 3853124 (+) True scfd1
XM_007258890.3 mRNA downstream 12565 4298796 ~ 4308409 (+) True klhdc1
XM_007258891.3 mRNA downstream 24086 4310317 ~ 4313788 (+) True dnaaf2
XM_007258893.3 mRNA downstream 36323 4322554 ~ 4329505 (+) True klhdc2
XM_007258894.2 mRNA downstream 68525 4354756 ~ 4364804 (+) True mok
XM_007258895.3 mRNA downstream 69336 4355567 ~ 4364804 (+) False mok
trnav-cac_1 other upstream 858112 3419927 ~ 3419999 (+) True trnav-cac_1
trnav-aac_3 other upstream 861200 3416839 ~ 3416911 (+) True trnav-aac_3
trnav-aac_2 other upstream 861871 3416168 ~ 3416240 (+) True trnav-aac_2
TU104827 other upstream 1300017 2900134 ~ 2978094 (+) True G77722
TU105324 other downstream 3276 4289507 ~ 4298184 (+) True G78111
TU105595 other downstream 1165884 5452115 ~ 5527965 (+) False LOC103025550
TU105776 other downstream 2571178 6857409 ~ 6861157 (+) False LOC103024862
TU106040 other downstream 3308476 7594707 ~ 7607664 (+) True G78671
TU106110 other downstream 3370098 7656329 ~ 7670774 (+) False fam167b

Expression Profile


XR_002650303.1 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.5.
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XR_002650303.1 Expression in each Bioproject

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XR_002650303.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 8.
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