RNA id: XR_002650347.1


Basic Information

Item Value
RNA id XR_002650347.1
length 1412
lncRNA type inter_gene
GC content 0.51
exon number 5
gene id LOC111193214
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 21491701 ~ 21506791 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

acacacacacagacgcttCCCTCCAGCCGTGGGCAGGATTCATCAGGGCCGAAATGCAGAGCCGTGAAGTGTTAATTTAGCGCTCCTGCTGGGAGAGAGGCTGCTTGGGGAAGGAGAGGGTTGCAGATCCAGGAAGCCTGGAATCGTTGGGCATAAGACAAGAATACCCCCTGGACAAGGCGCCAGTCCATCACAGGcctgcCATCGACAGCGGCGTGTTTCCTCCGTAACAAGGAATAGCAGAAGTCATTGACAAAGTAAGCACTGTTGGAGTGACTAAAGGCCTCAGTGTTGCAGTACACTGCCCGGAGGCATCCGTGAAAGCTTATTATCCCAACTTAGGCCTGAAAGTGAACTGTGAGGCTGCGCCAAACCCCAGCAGGAAGCTAACAGACTGTGCCAGAGGAGGCCCCCTGAGGGCCCGGGGGCATTGTGTCAAGGCCTTGTCTACTTCACACATATTAAGGATCACATGCCACAATTTCACACCTCGGTAGGGGAGAGGGTAAACTGCACCCCCGCCCCCTTTTCCCTTTTGGCAGTGAGTTGGGCAGAAGTGACATTTATTGCCTGTTAGCTGTTAACAAGTGAGTTCAAGGTCAGTGTTGTTAGTCAGCGTTGATTAGCGCATTCAGCGGCGTGAACCGGGCCCCGTTTACGCCGTACACGTTGAGGGTTACGGCAGCAGGTTGTTTtcagtagattttttttgttattttttttgtgtgtgacaTGCATACACCCTGTTGAGGAAGAAAGAAGCTATTGACTGCTCAGTTGTGCAGGGGGTGCATTTTTCAGCACTCCACTTCAGGGGTTGGAGACATTTCTACTGTCATTTTCCTCCAGTCCTTCAGAGTAATTCTTTTCTCCCCCTCCATTTCTGCAGCAGTGCACTGTGTGGCGGCCTGAATTGTGTGTTATTACCCAGCTGGAGACAATATCATTACTACATATTTGCTGTCAAGGGTCTGCAAAGAATGGTGCCGTCGCGGGCCTCGGTGATCTAACAAGCTCACACAGTGCTCCTGAATTACCCACTCCTATAGGGAGGAAGTCAAACACTAGCCGCTTGAGAGCTCCGCAGCCTGCTGCCGCCTTTGACGCCTGCCTGTGTGTCCTCAGGAGaagaggaaaggagagagagggagagagaaagagagagggagagaaagagggaaaaaaaacagccattgtCTTCAGCTGATTCCGGGCAACAGTTCAGATACAGAAAGGGCACTGAGCCAAGTCATCTGCAGCAAGAGAGTCCTCAGCAAAGGCaaggcaacaaaacacacacactcacacacacaaacatacagaaacAGACATTTGTTAGTGTCTTGAAGCCAGAGGATGGGGCTGGATGGGAAAACTGCGTTTTTTTATAGGGTTGTTGGAGAGTAAGAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110801 lncRNA upstream 3487 21488012 ~ 21488214 (+) True G82234
TU110744 lncRNA upstream 71281 21391162 ~ 21420420 (+) False G82193
TU110745 lncRNA upstream 91817 21398686 ~ 21399884 (+) True G82194
TU110743 lncRNA upstream 96987 21391162 ~ 21394714 (+) True G82193
TU110609 lncRNA upstream 465897 21024135 ~ 21025804 (+) True G82091
TU110866 lncRNA downstream 50626 21557417 ~ 21557995 (+) True G82258
TU110811 lncRNA downstream 141473 21648264 ~ 21673438 (+) False ralgapa2
TU110881 lncRNA downstream 191540 21698331 ~ 21700510 (+) False G82266
TU110887 lncRNA downstream 191540 21698331 ~ 21700510 (+) False G82266
TU110875 lncRNA downstream 191928 21698719 ~ 21700510 (+) False G82266
XM_007252546.2 mRNA upstream 195445 21282603 ~ 21296256 (+) True gpr68
XM_022672922.1 mRNA upstream 212563 21194708 ~ 21279138 (+) True LOC103041063
XM_007252545.3 mRNA upstream 212563 21194709 ~ 21279138 (+) False LOC103041063
XM_022672919.1 mRNA upstream 302433 21141773 ~ 21189268 (+) True LOC103047712
XM_022672931.1 mRNA downstream 14116 21520907 ~ 21672140 (+) True ralgapa2
XM_022672936.1 mRNA downstream 407435 21914226 ~ 21926373 (+) True tmem87a
XM_007253814.3 mRNA downstream 420775 21927566 ~ 21948191 (+) True vps39
XM_007253813.3 mRNA downstream 449217 21956008 ~ 21994947 (+) True galnt16
XM_007253808.3 mRNA downstream 493822 22000613 ~ 22046430 (+) False numb
TU110179 other upstream 1818063 19673127 ~ 19673638 (+) True G81763
TU110177 other upstream 1825654 19665736 ~ 19666047 (+) True G81761
TU110107 other upstream 2560947 18930238 ~ 18930754 (+) True G81704
XR_002650340.1 other upstream 2970754 18511622 ~ 18520947 (+) False LOC103033848
TU109877 other upstream 3027605 18460130 ~ 18464096 (+) False LOC103035760
TU111179 other downstream 850853 22357644 ~ 22358135 (+) True G82488
TU111323 other downstream 1723639 23230430 ~ 23231318 (+) True G82609
TU111569 other downstream 2368648 23875439 ~ 23877767 (+) False timm9
TU111570 other downstream 2368648 23875439 ~ 23877767 (+) True timm9
TU111581 other downstream 2402891 23909682 ~ 23920698 (+) True G82811

Expression Profile