RNA id: XR_002650362.1


Basic Information

Item Value
RNA id XR_002650362.1
length 881
lncRNA type inter_gene
GC content 0.45
exon number 5
gene id LOC111193229
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 25984681 ~ 25993012 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tttgtgttttgggGGATTTTGTTGCTGAAGTCTTTTGTTTCTTGAATCTCTGGTTTgtttctgagttttggcacgtttttcgtggatgggcggggcttagaaggaGGCGTTTACCTTGTATTTGGACTGACAGGTGCCCTGAAACCTCGTCTGTGGCTGACCACGCCcacccgccagcttcaagcgttCTTCAGTCATGGCGGAGCGACGGTTTGcagtgaacagcagcagcaggagTCTACTGTGGTCAAGCGACGGATTTCGAACCCTAATAAAGTGCCAAATCTTCATCACCCACTGAAGAGCTACACTACATGCAAGCTAGGCTTAGCATACAGTCCTACTATGCATGAGTCCAGAGTGCCGTCCAGGGCCTAGTCAAGATCCTGTTACCAGTGGCCAACCAGTAAAATGTGAGGAGGATTTTCTGGCTGCCGTGTCAAGTGACTTTACCTGTGTGTTTCAAGGGCAACCATATTTCAGCATGGTCTGAAGCAACTCCAGAAAGGCAGCTGAAAACAACTTTCCATGGTGAGGCTGGCATTGATTATAGTGCACTCAGACGATTGCAGGAATAGAACATCTCTTTGAGGATGACAGAAAAGGAAAGTCTCCCAAATACTCACAGAATGATTTGGACAGCAGCAATTTCAAGTATGTATAAATTTTGTCATCTGCATTtgtgtaacattttaaacatataaatgttttaaacttcAGAACAGCTGGGGGATTTTAAAGTTGTGAGCCTTGCTCAGGGTGTACTGGCACCAAGGTTCTTCCAGGAGTGGGGCCTCAACTTTAGATCAACTGTTCAGCTTGATAACATTGCAAGAAATAATGTATATGGACTGACTTCTAGAGAAGCTTTTTAAGCAgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112538 lncRNA upstream 182229 25798460 ~ 25802452 (+) True G83522
TU112455 lncRNA upstream 447411 25517590 ~ 25537270 (+) True G83456
TU112448 lncRNA upstream 489021 25495158 ~ 25495660 (+) True G83449
TU112445 lncRNA upstream 520428 25463900 ~ 25464253 (+) True G83446
TU112439 lncRNA upstream 605390 25378571 ~ 25379291 (+) True G83441
TU112638 lncRNA downstream 241904 26234916 ~ 26235175 (+) True G83601
TU112639 lncRNA downstream 242486 26235498 ~ 26253602 (+) True G83602
TU112689 lncRNA downstream 281989 26275001 ~ 26305343 (+) False c9h14orf132
TU112700 lncRNA downstream 317697 26310709 ~ 26310948 (+) True G83649
TU112701 lncRNA downstream 333020 26326032 ~ 26327286 (+) False LOC103031022
XM_007257438.3 mRNA upstream 9398 25919557 ~ 25975283 (+) True LOC103033015
XM_022673055.1 mRNA upstream 9398 25919557 ~ 25975283 (+) False LOC103033015
XM_022673054.1 mRNA upstream 9398 25919565 ~ 25975283 (+) False LOC103033015
XM_022673056.1 mRNA upstream 12867 25919557 ~ 25971814 (+) False LOC103033015
XM_007257442.3 mRNA upstream 67837 25835147 ~ 25916844 (+) True LOC103033987
XM_015607884.2 mRNA downstream 282008 26275020 ~ 26305383 (+) True c9h14orf132
XM_007257434.2 mRNA downstream 328173 26321185 ~ 26327338 (+) True LOC103031022
XM_007257462.2 mRNA downstream 335789 26328801 ~ 26330956 (+) True LOC103041814
XM_015607885.2 mRNA downstream 338915 26331927 ~ 26335823 (+) True LOC103041516
XM_007257461.3 mRNA downstream 358119 26351131 ~ 26352435 (+) True LOC103041211
XR_002650360.1 other upstream 12438 25919557 ~ 25972243 (+) False LOC103033015
TU112312 other upstream 950560 25030037 ~ 25034121 (+) False c9h8orf74
TU112274 other upstream 1049131 24935073 ~ 24935550 (+) False LOC111193228
trnal-cag_10 other upstream 1156925 24827674 ~ 24827756 (+) True trnal-cag_10
trnal-uaa_4 other upstream 1674186 24310413 ~ 24310495 (+) True trnal-uaa_4
TU112640 other downstream 242486 26235498 ~ 26249096 (+) False G83602
XR_002650363.1 other downstream 399878 26392890 ~ 26399267 (+) False spata7
trnay-gua_9 other downstream 515028 26508040 ~ 26508125 (+) True trnay-gua_9
TU112857 other downstream 734811 26727823 ~ 26747751 (+) False fermt2
TU112859 other downstream 734896 26727908 ~ 26747751 (+) False fermt2

Expression Profile