RNA id: XR_002650364.1


Basic Information

Item Value
RNA id XR_002650364.1
length 316
lncRNA type inter_gene
GC content 0.48
exon number 3
gene id LOC111193231
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 26507339 ~ 26565844 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGCATACTGTAGAGGAAGAGGGCCACGATGGCAAGCAGGAGTAAGGCCAGTACGATTTTGATGACCAGCCATTTGTACTGGTTGCAGACAAGAGGGCAGTGGCAGCAGATTATGACTCCCAAGATACTCACATGAAAAGGTAAAGTCTTTGGAAGACAAATGCACACAACAATGAGGTATGTGCCTCTTGCTTTTTGTGCATATGGGATGAACTGGAGGTCACTGGAGTGAGAGCAACTGACCTGAGCTTTGGCTAGCAGGTAATGGGTGTGCATGCATTTGTGGCATGTGTGCAGTGAAGCACTCCTTCAGGAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112730 lncRNA upstream 85550 26422514 ~ 26423061 (+) True G83672
TU112718 lncRNA upstream 168339 26339831 ~ 26340272 (+) True G83663
TU112716 lncRNA upstream 168912 26339182 ~ 26339699 (+) True G83661
TU112701 lncRNA upstream 181325 26326032 ~ 26327286 (+) False LOC103031022
TU112700 lncRNA upstream 197663 26310709 ~ 26310948 (+) True G83649
TU112852 lncRNA downstream 153134 26718978 ~ 26719365 (+) True G83760
TU112851 lncRNA downstream 153791 26719635 ~ 26723005 (+) True G83759
TU112853 lncRNA downstream 158495 26724339 ~ 26724613 (+) True G83761
XR_002650368.1 lncRNA downstream 339037 26904881 ~ 26924218 (+) True LOC111193232
TU112888 lncRNA downstream 481702 27047546 ~ 27054268 (+) True G83785
XM_022673062.1 mRNA upstream 2099 26488033 ~ 26506512 (+) True snx14
XM_022673064.1 mRNA upstream 2099 26488034 ~ 26506512 (+) False snx14
XM_022673063.1 mRNA upstream 2099 26488034 ~ 26506512 (+) False snx14
XM_022673065.1 mRNA upstream 2099 26488035 ~ 26506512 (+) False snx14
XM_007257419.3 mRNA upstream 23989 26474778 ~ 26484622 (+) False LOC103026145
NM_001291252.1 mRNA downstream 38874 26604718 ~ 26613764 (+) True bmp4
XM_007257406.3 mRNA downstream 127574 26693418 ~ 26716015 (+) True LOC103023862
XM_007257407.3 mRNA downstream 127579 26693423 ~ 26716015 (+) False LOC103023862
XM_022672485.1 mRNA downstream 162074 26727918 ~ 26777488 (+) True fermt2
XM_022673069.1 mRNA downstream 229964 26795808 ~ 26897068 (+) True stxbp6
trnay-gua_9 other upstream 486 26508040 ~ 26508125 (+) True trnay-gua_9
XR_002650363.1 other upstream 109344 26392890 ~ 26399267 (+) False spata7
TU112640 other upstream 259515 26235498 ~ 26249096 (+) False G83602
XR_002650360.1 other upstream 536368 25919557 ~ 25972243 (+) False LOC103033015
TU112312 other upstream 1474490 25030037 ~ 25034121 (+) False c9h8orf74
TU112857 other downstream 161979 26727823 ~ 26747751 (+) False fermt2
TU112859 other downstream 162064 26727908 ~ 26747751 (+) False fermt2
TU113122 other downstream 1249961 27815805 ~ 27819547 (+) False fam98b
TU113547 other downstream 2404420 28970264 ~ 28970827 (+) True LOC107197841
LOC107197841 other downstream 2404435 28970279 ~ 28970839 (+) False LOC107197841

Expression Profile