RNA id: trnal-cag_10


Basic Information

Item Value
RNA id trnal-cag_10
length 83
RNA type tRNA
GC content 0.61
exon number 1
gene id trnal-cag_10
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 24827674 ~ 24827756 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTCAGgatggccgagcggtctaaggcgctgcgtTCAGGTCGCAGTCTCCTCTGGAggcgtgggttcgaatcccacttctgaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112060 lncRNA upstream 54881 24771882 ~ 24772793 (+) True G83167
TU112004 lncRNA upstream 185019 24642392 ~ 24642655 (+) True G83123
TU112002 lncRNA upstream 190792 24636606 ~ 24636882 (+) True G83121
TU111998 lncRNA upstream 192476 24630873 ~ 24635198 (+) True G83120
TU111994 lncRNA upstream 207737 24619695 ~ 24619937 (+) True G83116
TU112074 lncRNA downstream 10774 24838530 ~ 24840128 (+) True G83180
TU112240 lncRNA downstream 65487 24893243 ~ 24893639 (+) True G83295
TU112242 lncRNA downstream 90669 24918425 ~ 24924815 (+) False ephx2
TU112264 lncRNA downstream 104163 24931919 ~ 24932539 (+) True G83307
TU112322 lncRNA downstream 300204 25127960 ~ 25132154 (+) True G83354
XM_022672484.1 mRNA upstream 1574 24814910 ~ 24826100 (+) True LOC103046279
XM_007252011.3 mRNA upstream 13865 24807926 ~ 24813809 (+) True LOC103033951
XM_007252013.3 mRNA upstream 22289 24799032 ~ 24805385 (+) True LOC103034484
XM_007252014.3 mRNA upstream 22289 24799045 ~ 24805385 (+) False LOC103034484
XM_007252008.3 mRNA upstream 34343 24772806 ~ 24793331 (+) True LOC103032669
XM_007252023.3 mRNA downstream 21820 24849576 ~ 24882752 (+) True ptk2b
XM_007252024.3 mRNA downstream 21820 24849576 ~ 24882752 (+) False ptk2b
XM_007252025.3 mRNA downstream 21820 24849576 ~ 24882752 (+) False ptk2b
XM_007252027.3 mRNA downstream 68138 24895894 ~ 24924813 (+) True ephx2
XM_022673022.1 mRNA downstream 106408 24934164 ~ 24936186 (+) True LOC111193228
trnal-uaa_4 other upstream 517179 24310413 ~ 24310495 (+) True trnal-uaa_4
trnal-uaa_3 other upstream 518784 24308808 ~ 24308890 (+) True trnal-uaa_3
trnal-uaa_2 other upstream 520241 24307351 ~ 24307433 (+) True trnal-uaa_2
trnal-uaa_1 other upstream 520981 24306611 ~ 24306693 (+) True trnal-uaa_1
TU111651 other upstream 685442 24139389 ~ 24142232 (+) True G82853
TU112274 other downstream 107317 24935073 ~ 24935550 (+) False LOC111193228
TU112312 other downstream 202281 25030037 ~ 25034121 (+) False c9h8orf74
XR_002650360.1 other downstream 1091801 25919557 ~ 25972243 (+) False LOC103033015
TU112640 other downstream 1407742 26235498 ~ 26249096 (+) False G83602
XR_002650363.1 other downstream 1565134 26392890 ~ 26399267 (+) False spata7