RNA id: trnal-uaa_3


Basic Information

Item Value
RNA id trnal-uaa_3
length 83
RNA type tRNA
GC content 0.52
exon number 1
gene id trnal-uaa_3
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 24308808 ~ 24308890 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACCAGgatggccgagtggttaaggcgttGGACTTAAGATCCAATGGACATATGTCTGCGTGGGTTCAAACCCCACTTCTGGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111624 lncRNA upstream 169904 24136576 ~ 24138904 (+) True G82838
TU111583 lncRNA upstream 334833 23909682 ~ 23973975 (+) False G82811
TU111585 lncRNA upstream 385948 23922348 ~ 23922860 (+) False G82811
TU111590 lncRNA upstream 393349 23913129 ~ 23915459 (+) True G82816
TU111588 lncRNA upstream 400200 23908338 ~ 23908608 (+) True G82814
TU111920 lncRNA downstream 5825 24314715 ~ 24314965 (+) True G83064
TU111934 lncRNA downstream 40551 24349441 ~ 24350477 (+) True G83071
TU111933 lncRNA downstream 40639 24349529 ~ 24350535 (+) False G83071
XR_002650357.1 lncRNA downstream 48085 24356975 ~ 24367973 (+) True LOC111193226
XR_002650358.1 lncRNA downstream 263438 24572328 ~ 24576551 (+) True LOC111193227
XM_007251961.3 mRNA upstream 6042 24299171 ~ 24302766 (+) True stx11
XM_007251958.3 mRNA upstream 33700 24271342 ~ 24275108 (+) True LOC103045657
XM_022672985.1 mRNA upstream 38942 24264445 ~ 24269866 (+) False rmnd1
XM_007251957.3 mRNA upstream 38942 24265734 ~ 24269866 (+) True rmnd1
XM_022672982.1 mRNA upstream 51558 24167119 ~ 24257250 (+) True syne1
XM_015606503.2 mRNA downstream 8420 24317310 ~ 24336229 (+) True LOC103045057
XM_022672986.1 mRNA downstream 8420 24317310 ~ 24336229 (+) False LOC103045057
XM_007251966.3 mRNA downstream 74988 24383878 ~ 24403591 (+) True LOC103047809
XM_022672987.1 mRNA downstream 94800 24403690 ~ 24407033 (+) True LOC111193225
XM_022672988.1 mRNA downstream 109119 24418009 ~ 24458899 (+) True LOC103021971
trnal-uaa_2 other upstream 1375 24307351 ~ 24307433 (+) True trnal-uaa_2
trnal-uaa_1 other upstream 2115 24306611 ~ 24306693 (+) True trnal-uaa_1
TU111651 other upstream 166576 24139389 ~ 24142232 (+) True G82853
TU111581 other upstream 388110 23909682 ~ 23920698 (+) True G82811
TU111569 other upstream 431041 23875439 ~ 23877767 (+) False timm9
trnal-uaa_4 other downstream 1523 24310413 ~ 24310495 (+) True trnal-uaa_4
trnal-cag_10 other downstream 518784 24827674 ~ 24827756 (+) True trnal-cag_10
TU112274 other downstream 626183 24935073 ~ 24935550 (+) False LOC111193228
TU112312 other downstream 721147 25030037 ~ 25034121 (+) False c9h8orf74
XR_002650360.1 other downstream 1610667 25919557 ~ 25972243 (+) False LOC103033015