RNA id: trnav-cac_1


Basic Information

Item Value
RNA id trnav-cac_1
length 73
RNA type tRNA
GC content 0.50
exon number 1
gene id trnav-cac_1
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 3419927 ~ 3419999 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTTTCCGTAGTGTAGTGGTTATCACGTTCGCCTCACACGCGAAAGGTCCCCGGTTCGAAACCGGGCGGAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104955 lncRNA upstream 25051 3394380 ~ 3394876 (+) True G77817
TU104946 lncRNA upstream 60194 3322085 ~ 3359733 (+) False traf3
TU104928 lncRNA upstream 119256 3260466 ~ 3300671 (+) True G77804
TU104933 lncRNA upstream 122485 3220621 ~ 3297442 (+) True G77808
TU104923 lncRNA upstream 207062 3212557 ~ 3212865 (+) True G77799
TU104988 lncRNA downstream 122253 3542252 ~ 3549615 (+) True G77847
TU105124 lncRNA downstream 345781 3765780 ~ 3824274 (+) False g2e3
TU105125 lncRNA downstream 378019 3798018 ~ 3824872 (+) False g2e3
TU105133 lncRNA downstream 496805 3916804 ~ 3918653 (+) False G77961
TU105134 lncRNA downstream 496805 3916804 ~ 3921829 (+) True G77961
XM_022672606.1 mRNA upstream 26769 3365742 ~ 3393158 (+) True LOC103028495
XM_022672605.1 mRNA upstream 27268 3365742 ~ 3392659 (+) False LOC103028495
XM_022672604.1 mRNA upstream 60183 3331931 ~ 3359744 (+) True traf3
XM_022672603.1 mRNA upstream 95177 3309818 ~ 3324750 (+) True rcor1
XM_022672602.1 mRNA upstream 123274 3261791 ~ 3296653 (+) True tecpr2
XM_007257917.3 mRNA downstream 62139 3482138 ~ 3484662 (+) True foxg1
XM_022672461.1 mRNA downstream 393884 3813883 ~ 3824815 (+) True g2e3
XM_022672610.1 mRNA downstream 405629 3825628 ~ 3853124 (+) True scfd1
XM_022672611.1 mRNA downstream 433607 3853606 ~ 3858455 (+) True LOC103022404
XM_007257912.3 mRNA downstream 448554 3868553 ~ 3879318 (+) True coch
trnav-aac_3 other upstream 3016 3416839 ~ 3416911 (+) True trnav-aac_3
trnav-aac_2 other upstream 3687 3416168 ~ 3416240 (+) True trnav-aac_2
TU104827 other upstream 441833 2900134 ~ 2978094 (+) True G77722
TU104828 other upstream 441833 2900134 ~ 2978094 (+) False G77722
TU104477 other upstream 1722946 1693356 ~ 1696981 (+) True G77471
TU105324 other downstream 869508 4289507 ~ 4298184 (+) True G78111
TU105595 other downstream 2032116 5452115 ~ 5527965 (+) False LOC103025550
TU105776 other downstream 3437410 6857409 ~ 6861157 (+) False LOC103024862
TU106040 other downstream 4174708 7594707 ~ 7607664 (+) True G78671
TU106110 other downstream 4236330 7656329 ~ 7670774 (+) False fam167b