RNA id: TU290632


Basic Information

Item Value
RNA id TU290632
length 321
lncRNA type inter_gene
GC content 0.53
exon number 2
gene id G214134
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 6112603 ~ 6113010 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGAGACGAGACCGGGGACTTGACTTGAGACAAAACAGGAGATGGGACAGAAGACTTGACAAAGAAAGGAGACGGAACAGGGGACGTgactggagactggacattgggcaagacaggagactggacaggaaactggacaggggacgatgactggacgtgagacatgACAGgtgactggacaggactagacatgggaacaggAACCAAAACATTGACAGGAACGGACACGAAAACGGTGACAGGAACAGGCACAGACAAACCAGACAGGACAGGAACCGGAACATAGACAGACATGGGGACCAGAACAGGAAGCGACATGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651903.1 lncRNA upstream 25006 6086759 ~ 6087597 (+) True LOC111195966
TU290624 lncRNA upstream 26102 6086241 ~ 6086501 (+) True G214126
TU290623 lncRNA upstream 42849 6069424 ~ 6069754 (+) True G214125
TU290612 lncRNA upstream 75398 6035494 ~ 6037205 (+) True G214121
TU290613 lncRNA upstream 75398 6035494 ~ 6037205 (+) False G214121
XR_002651891.1 lncRNA downstream 105376 6218386 ~ 6235720 (+) True LOC111195955
TU290692 lncRNA downstream 162704 6275714 ~ 6275923 (+) True G214174
TU290742 lncRNA downstream 267934 6380944 ~ 6473744 (+) True G214215
TU290760 lncRNA downstream 356463 6469473 ~ 6470200 (+) True G214227
TU290835 lncRNA downstream 468284 6581294 ~ 6581733 (+) True G214283
XM_022684418.1 mRNA upstream 2337 6104774 ~ 6110266 (+) True LOC111195931
XM_007241205.3 mRNA upstream 408754 5689706 ~ 5703849 (+) True lrpap1
XM_022684535.1 mRNA upstream 652099 5459757 ~ 5460504 (+) True LOC111195958
XM_022684686.1 mRNA upstream 684838 5415209 ~ 5427765 (+) True LOC103044852
XM_022684687.1 mRNA upstream 684838 5415211 ~ 5427765 (+) False LOC103044852
XM_022685040.1 mRNA downstream 37678 6150688 ~ 6159645 (+) False LOC103039918
XM_022685039.1 mRNA downstream 37678 6150688 ~ 6159644 (+) True LOC103039918
XM_022684419.1 mRNA downstream 67240 6180250 ~ 6184176 (+) True LOC111195932
XM_007229489.3 mRNA downstream 180100 6293110 ~ 6299551 (+) True LOC103039606
XM_007229487.3 mRNA downstream 189706 6302716 ~ 6312607 (+) True LOC103039100
TU290451 other upstream 590928 5521184 ~ 5521675 (+) True G214006
TU290305 other upstream 938507 5173069 ~ 5174096 (+) True G213891
TU290072 other upstream 1683641 4398585 ~ 4428962 (+) True G213715
TU290045 other upstream 1749438 4344850 ~ 4363165 (+) False inpp4b
TU290693 other downstream 170771 6283781 ~ 6284368 (+) True G214175
trnak-cuu_9 other downstream 212975 6325985 ~ 6326057 (+) True trnak-cuu_9
TU290727 other downstream 286066 6399076 ~ 6409068 (+) True LOC111196031
trnam-cau_43 other downstream 368548 6481558 ~ 6481629 (+) True trnam-cau_43
TU291318 other downstream 1697983 7810993 ~ 7813032 (+) False pold4

Expression Profile