RNA id: TU292091


Basic Information

Item Value
RNA id TU292091
length 357
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G215197
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 9694917 ~ 9695273 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgagaaactgcagaattatgtattggactaaaatgagcacgaggagataaaagagaacctttacctgtgagtagctcatatcagaacacgcaaatctctctctctctctgtgtctctctctctcgcacgtgaacttctccgcactgtgtttagctgttcttaaaaatcatttttattaaataatagttctatgcttctatgttagtgttaatttacataattctgatcatatttcgctcattcaaacagcctgaaaacagacttgtaatcttgtaatcaacaagcttgtaatcaatgtggccgtaaagtcacagctaaaggaggaaatacatcaaacctgttctcccatctccgaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU291957 lncRNA upstream 212336 9481672 ~ 9482581 (+) True G215103
TU291955 lncRNA upstream 213379 9481315 ~ 9481538 (+) True G215102
TU291947 lncRNA upstream 226518 9466620 ~ 9468399 (+) True G215094
TU291871 lncRNA upstream 384744 9288076 ~ 9310173 (+) True G215039
TU291829 lncRNA upstream 625050 9068995 ~ 9069867 (+) True G215011
TU292094 lncRNA downstream 65015 9760288 ~ 9762248 (+) True G215199
TU292118 lncRNA downstream 91879 9787152 ~ 9788616 (+) True G215215
TU292133 lncRNA downstream 123991 9819264 ~ 9890322 (+) True G215224
TU292146 lncRNA downstream 195549 9890822 ~ 9891888 (+) True G215236
TU292156 lncRNA downstream 220114 9915387 ~ 9915917 (+) True G215245
XM_022684426.1 mRNA upstream 15860 9660500 ~ 9679057 (+) True rufy2
XM_022684567.1 mRNA upstream 41065 9632391 ~ 9653852 (+) True cfap43
XM_022684568.1 mRNA upstream 41065 9632391 ~ 9653852 (+) False cfap43
XM_007240835.3 mRNA upstream 80275 9565948 ~ 9614642 (+) True tspan15
XM_007240834.3 mRNA upstream 151946 9524819 ~ 9542971 (+) True hk1
XM_022684570.1 mRNA downstream 754 9696027 ~ 9759882 (+) True LOC103028294
XM_022684569.1 mRNA downstream 10067 9705340 ~ 9759882 (+) False LOC103028294
XM_022684572.1 mRNA downstream 10067 9705340 ~ 9759882 (+) False LOC103028294
XM_022684571.1 mRNA downstream 10067 9705340 ~ 9759882 (+) False LOC103028294
XM_007258762.3 mRNA downstream 105423 9800696 ~ 9817693 (+) True glud1
TU291737 other upstream 733147 8958299 ~ 8961770 (+) False LOC103041196
TU291488 other upstream 1583592 8110948 ~ 8111325 (+) True G214773
XR_002651890.1 other upstream 1817799 7856162 ~ 7877118 (+) False LOC103021346
TU291318 other upstream 1881885 7810993 ~ 7813032 (+) False pold4
trnam-cau_43 other upstream 3213288 6481558 ~ 6481629 (+) True trnam-cau_43
TU292392 other downstream 880222 10575495 ~ 10583088 (+) True sprn
TU292521 other downstream 1251806 10947079 ~ 10948287 (+) True G215513
TU292602 other downstream 1431893 11127166 ~ 11175348 (+) False cpeb3
TU292603 other downstream 1434097 11129370 ~ 11175348 (+) False cpeb3
TU292927 other downstream 2510228 12205501 ~ 12206164 (+) True G215834

Expression Profile