RNA id: TU292133


Basic Information

Item Value
RNA id TU292133
length 1159
lncRNA type sense_over
GC content 0.36
exon number 2
gene id G215224
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 9819264 ~ 9890322 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGcaaatgtcatgtttttattaaaggtttgaaagactatatacaaaaatatttactcACTACTGAACAGATGGTGCTGAAGACAATATTGGTCTATTGGACAGATTTGATCATGAGAAAATATTAGCATAATGTTGGGATTAGCTTATCTTCATTTTCCAAGCCTTCATACTGTATTTACACACAATAAGCCACAGACCATTCAGGCTTCTCCTTTGTTGCAATACaaatgaaagtaataaaaaaaataataaaaaataaaaaaaaaaggttccacACTCACCTCATCACTGTTCCACCTGTTAGACACAGTTGGCCGCAGTCCTTTGACACACACTACCTGCAGCATGTCTTCATAAGAAGGGTCTGGAGGGACCATCTCATAGTATGGCAGCTGGTACTCCTCAACTATtcctaaaaacaataataaaacaaaatatgtactacatttttacaaaaagtctctctctctacatcgaCATTCCTGGCCTAGGACTGTACTTGAATCTAGCAAGGATAGACTATGAATTTACCACAAATGTTAGGacatattttaaatcagtaCCTCCTGTGACACAGCGTCTGGCCATCTCCCAAATTACTAGAGCGTAGCTGTAAATATCAGCCATAATGTAGGCCTGGAAGTGGTTCTTATTCAGGGTCTCATCTAGAACCTCTGGAGCCATGTAGCGGCGAGTTCCCATTCGAGTGCTCAGAGGAACGTCCACTTCATTGGTATCACTGACAgacagtaaaaagaaaataaattaggcaaaaagttttaactttaagttattagagacactttaaacattttaatacaacCGATACAAGTCAGGTTAACCtttgttaaaatatttcttAATGATACAGACAAATTTACACTGACCATATGATGAATATGGATACACCCGCATTTATACTAGCATAATTGTTAAACAATacatccactagagggcagttcAGAGTTAAAGCTGACAACGTAATCATGGCAACAGTATAGGAGGTAGAGATGAAGAGCTTTACTTGTTTTGCTTGAACTACTGGCTAcattgtcatttttaatttcCAAGGGTACTGCTCTAATTAATCCATGTCCATAAGTTTTCAaagaacatgcaaaaaaatagacTAAATTAATCCAGAGTACAGATAGAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU292118 lncRNA upstream 30648 9787152 ~ 9788616 (+) True G215215
TU292094 lncRNA upstream 57016 9760288 ~ 9762248 (+) True G215199
TU292091 lncRNA upstream 123991 9694917 ~ 9695273 (+) True G215197
TU291957 lncRNA upstream 336683 9481672 ~ 9482581 (+) True G215103
TU291955 lncRNA upstream 337726 9481315 ~ 9481538 (+) True G215102
TU292146 lncRNA downstream 500 9890822 ~ 9891888 (+) True G215236
TU292156 lncRNA downstream 25065 9915387 ~ 9915917 (+) True G215245
TU292217 lncRNA downstream 94862 9985184 ~ 9985469 (+) True G215287
TU292225 lncRNA downstream 150885 10041207 ~ 10041714 (+) True G215294
TU292245 lncRNA downstream 183880 10074202 ~ 10074630 (+) True G215309
XM_007258762.3 mRNA upstream 1571 9800696 ~ 9817693 (+) True glud1
XM_022684570.1 mRNA upstream 59382 9696027 ~ 9759882 (+) True LOC103028294
XM_022684569.1 mRNA upstream 59382 9705340 ~ 9759882 (+) False LOC103028294
XM_022684572.1 mRNA upstream 59382 9705340 ~ 9759882 (+) False LOC103028294
XM_022684571.1 mRNA upstream 59382 9705340 ~ 9759882 (+) False LOC103028294
XM_007258713.3 mRNA downstream 639307 10529629 ~ 10555221 (+) True LOC103041708
XM_007258712.3 mRNA downstream 672092 10562414 ~ 10572740 (+) True LOC103041404
XM_015608228.2 mRNA downstream 689270 10579592 ~ 10579981 (+) False sprn
XM_007258708.3 mRNA downstream 705008 10595330 ~ 10612761 (+) True dna2
XM_007258703.3 mRNA downstream 738097 10628419 ~ 10653984 (+) False kmo
TU291737 other upstream 857494 8958299 ~ 8961770 (+) False LOC103041196
TU291488 other upstream 1707939 8110948 ~ 8111325 (+) True G214773
XR_002651890.1 other upstream 1942146 7856162 ~ 7877118 (+) False LOC103021346
TU291318 other upstream 2006232 7810993 ~ 7813032 (+) False pold4
trnam-cau_43 other upstream 3337635 6481558 ~ 6481629 (+) True trnam-cau_43
TU292392 other downstream 685173 10575495 ~ 10583088 (+) True sprn
TU292521 other downstream 1056757 10947079 ~ 10948287 (+) True G215513
TU292602 other downstream 1236844 11127166 ~ 11175348 (+) False cpeb3
TU292603 other downstream 1239048 11129370 ~ 11175348 (+) False cpeb3
TU292927 other downstream 2315179 12205501 ~ 12206164 (+) True G215834

Expression Profile