RNA id: TU292242


Basic Information

Item Value
RNA id TU292242
length 3619
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id LOC111195963
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 10141138 ~ 10157300 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tagatagatagatagataaagatttCCATTTTTAAGTTAACACAGACAGTGAAAAATATTACCAGAGTAGACATGCATATTTTTCCTCCTTCTGTCCAACTGCATatatggtttggtttgttgtttAAGTGagtggcctttttttttttctttttcttttaaacatcACTTCATTTCAGCGTTGAAAACAGCCATTTTTCCATTACCTTGAGAATGCaggtaacatatatatatatatagatagatagatagatagataaagatttCCATTTTTAAGTTAACACAGACAGTGAAAAATATTACCAGAGTAGACATGCATATTTTTCCTCCTTCTGTCCAACTGCATatatggtttggtttgttgtttAAGTGagtggccttttttttttcttttctttttttccttttttgagtTATTTCGGTTGGCGTATCGTAAGTTCTCCCTCTTATCGCAAGCTACGTAACATAAGAACATATTTTTCCCCTTTATAAAACGCTctgcattgtatttttttttaaggtgacCATTCCTTATGGCTGTGTGGAGACACTAGGATGAGAGAGAAGGGCGGGCCTCAGAGGACAGGGCAACGAAGTCAGAAGAGACGCTACTCGGACGACATCACACTGGAACTGTACAAGCACTGCACCAGGGCCCAAAAAGGAAACTGATGGGGCGGAAAGGTGTCACAGTGCCTCACTGGGTGTTCTGTGGTGAGTTAGATATGTTCGATATATACAACTGAATCTTTCCTTTTACCATTTTTCTTATCCTTTTCTTCCATCAGATGAATCTTGTCTACTCGCAGCCATACTAATTACTGCTAAATACAATGAAAGGAGCATAACGGCTTAGAACAAAGTGAACAGCGTATGCATTAAGCCTTTCCCGCATGGGGTCACTGATATTATTCACGTTTCTACTTTTTGACCACAGTGAAAATAAGCAGTATTCATgtcacacagatatacacacacacagatatgccTTAAAGGGAGAACACTGTGTCATGTGAGCATTGAACACACAACCACACGTCTCGTTTGCTTTGTGAACGTGCATTTTACAGCATGATCCATGATTTTACCTATTTCACCAGTGCACTGGAAGTCCATGAGCATGTGTTTTTAGGGATGAAGACGGACAAAGTGGGCGTGTGCAAAATTGGCACAGCCTAGGCTCCACCCACAACTACAAAGGGCAACGGGCACtgcattagtatttacaaaaacaaacgaaacaaaaaacaaaaatatatgacCCAGAAAATACACCAACACTAAGAACACTAACATTAGAACATTACAACACAAACTGCCACAAAAGGGGCCAATAAACCCAACAGCCTTTCAGCATGACCTGGACTCactgctcttagctcctccccctTTCTCTCCCAAGTCAGACTCAGAACTTCCATATCCTGAGTCACCCTCCatccttccttctttcttccTCAGGACTAACCTGCTCAGGCACTGCTCACAGTGAGCGAACAGACGGAACGACACGGACAGGACCAGACCTCGGACAGCAGACAGCAGGCAAGTGTGCAGGACAGACCAACACAGTGGGGGTGGGAAGGGTGTAATGGGGTTGCACGGGCTGGTGTCAGGGTCCCCTTTGGAGAAAGAACCTGTCGGAGAGGGCTTTCATAACCTGAAGTTGCAGAAAAGTCCACGAGGAGTGAACGGAACAGCATAGCATCTCAGGCTAATGTGCAAAACAGTACAGGccatttcaattcaattcaatccaAACATGCTTTGAacagtatagaaaaaaaacaaatgatatGCACAAGAGGCCGGAGCCctgggaaagtgagagagagacagagagagagaagggggcaCTAAAAGACGATGTATGTGAGAGTAGTGTTTAGCCCCCCCTGGCAGGCAGAAGACGAAGGTGTGCTCAGAACACACTGATAAATTGAAGGGAGCGTTCTGCAACTTCAGGTTCTGAGGACTCCGGTATCACACCTGCCAACAAGCAGACAAACAAGCAGACAGGCCAAGTGACCCAGCCCATGTTTGTGTTCTcggtagctgtgtgtgtgtgttggtgtgtatatAGATAGACATGTACATGTGCTTCTTAAAGCACAACAGAGCCAACAggctaaactaaataatacacacattcacacacacacacaaacatgctcacacccCCTCGAAAGCTCTCAAAAGTTCCCTTTACACAGACACTAAAatcattttttgtctttttttcccttctctTTATAAATATCTATGTATACACAACTATTAAACCGTGCCCCGCTTTTAAAAATcagcttcttttttttgaaaacacaaaatacttttaaatacagCATTATTCAGGAGATAAAAACCAAGAGTTccacaaaataacacaaaaatacttaaaaaaaaaaaaaaataaaaataataataaccgtCCTCACAGCTTCCCTCCTTTTatcaaacagaataaaaaatattgttaaaacaACTTCTGGTTGATGCCTAAATTCTACACTTTGGTAGCTTTACTCATGATAATAAGCAAAGTTTTAGTTTAGCCCCTCAAATATCCCACTCCTCACGTGACATTGCATCCAAACAAGACttatacatgtttaaaaaaaaaagaaaaaagaaacaaaggcagaaaaaaacaaaactaaccaaaaaaaaaaaaaaacaccatccaCTGAAACAGTGGGTTCTCCTTTTCACTATTTCACATTTCAGATTTGAAACTGCCATCACTTTCAGCCCTGTTAATAGTGTGAGGATCAACAATCTCGATATTTTACAACAGATTAATACTTTAAACACTCTTTCCGAACGACGGGCAGAAAAGATGGGATCATGGGCAAAAAGGACAAGACAGCGCCCCCTTTGGGCATCAGAAGCATGCAGCATCCGGAGGGCGGGGCCACTTGCCACAGCCGGCCCCCACGTCTAGCTACGGTAGGACTGAAGTGGTGGTGGCCACAGTTGGctttcaattttttatttaattttttttttaacttggttgcgttattttttcccccctcaTGTTTTCTCTTCAGGCCGGGCTCCTGGCGCCAATCCAGCCACCGAGAAGAAATGCTCCAATTATCCAGGTAAGCTGAAAGAGAGACATTTACATGTTGACAATTAACTGAtgatttttgtataaaaaaagacGTAAACAGTCCTCCTTTAGCAATGTAAGAGCTTTGCTTAGGGACAGAATGAAAAAATCTTAAATCAAACTATTCAACAAAATTGCCATTGGTCATCAAGGACCTGTaacagagcatttatttaaagttgtgTGGAAGTTATGGGTTCATGTTAATCAAAAACTGCTTGTGTACTGActtgcagtgtgtgtttggtggtaCCTGTGCCTGGTTTGGTTCACTGTAAAGGTGCAGCAGGTGCTCCTGAGCAGTGGAAGTGCACGTTGAGCCATTTAGCATCGCGGCGGTGCCACACACGAGTCTCTTCTGACTGGCAGCTACGCGGACGGCCCTGGCTGTCGATGTACTGCGTCAGACGGATGTATGCAATGCAGGCTGCGTCCTCTCCGATCAGGTGCACGTGTGGATTCAAGATGGTGGTGTGCACTGGCTTGCTGTTCTTACTCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651898.1 lncRNA upstream 12858 10112224 ~ 10140590 (+) True LOC111195964
TU292251 lncRNA upstream 15326 10132580 ~ 10138122 (+) True G215315
TU292232 lncRNA upstream 23710 10128748 ~ 10129738 (+) True G215296
TU292245 lncRNA upstream 78818 10074202 ~ 10074630 (+) True G215309
TU292225 lncRNA upstream 111734 10041207 ~ 10041714 (+) True G215294
TU292313 lncRNA downstream 106237 10263537 ~ 10264736 (+) True G215350
TU292372 lncRNA downstream 344411 10501711 ~ 10507072 (+) True G215397
TU292394 lncRNA downstream 473156 10630456 ~ 10633037 (+) True G215411
TU292407 lncRNA downstream 496827 10654127 ~ 10654340 (+) True G215419
TU292408 lncRNA downstream 499895 10657195 ~ 10657634 (+) True G215420
XM_007258759.3 mRNA upstream 266703 9857376 ~ 9886745 (+) True mmrn2
XM_007258762.3 mRNA upstream 335755 9800696 ~ 9817693 (+) True glud1
XM_022684569.1 mRNA upstream 393566 9705340 ~ 9759882 (+) False LOC103028294
XM_007258713.3 mRNA downstream 372329 10529629 ~ 10555221 (+) True LOC103041708
XM_007258712.3 mRNA downstream 405114 10562414 ~ 10572740 (+) True LOC103041404
XM_015608228.2 mRNA downstream 422292 10579592 ~ 10579981 (+) False sprn
XM_007258708.3 mRNA downstream 438030 10595330 ~ 10612761 (+) True dna2
XM_007258703.3 mRNA downstream 471119 10628419 ~ 10653984 (+) False kmo
TU291737 other upstream 1191678 8958299 ~ 8961770 (+) False LOC103041196
TU291488 other upstream 2042123 8110948 ~ 8111325 (+) True G214773
XR_002651890.1 other upstream 2276330 7856162 ~ 7877118 (+) False LOC103021346
TU291318 other upstream 2340416 7810993 ~ 7813032 (+) False pold4
trnam-cau_43 other upstream 3671819 6481558 ~ 6481629 (+) True trnam-cau_43
TU292392 other downstream 418195 10575495 ~ 10583088 (+) True sprn
TU292521 other downstream 789779 10947079 ~ 10948287 (+) True G215513
TU292602 other downstream 969866 11127166 ~ 11175348 (+) False cpeb3
TU292603 other downstream 972070 11129370 ~ 11175348 (+) False cpeb3
TU292927 other downstream 2048201 12205501 ~ 12206164 (+) True G215834

Expression Profile