RNA id: TU292602


Basic Information

Item Value
RNA id TU292602
length 1210
RNA type TUCP
GC content 0.59
exon number 6
gene id cpeb3
representative False

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 11125700 ~ 11195423 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGCTGACTCTTACCTCGGTTATAGCAGGGGAGCTCATTTGTCATATCAATACCGAGACGaaccaaactgaaaaataaTAGCTTTTATTCACAGAATCCCCCAAAGGTGAAACGATAAGCTCGGCAAACCATGCAGGATGATTTACTGATGGACAAAAGCAAAGCCCAGGCTCACCAGCAGCAGCCAGACCCAGCACCGAGCACCGAGCCACCCTCCACCCCGACCCCCTCGTCGGAGCCGGCCGTCCCGGAGGACAGTCCGTCCGGCCAAGCCCCGTCGCGGCCGAGCGGCAAGGAGAAAGTGGCCATGGAGTCTCCGCTCCTTCCCGGCTTGAGCTTCCCCCAGCCGCCGCAGGAGACCGTGGGCAGCTCGCTGTGGTCCTCGCCGACCACCACCAACACCGTGGACGATAGCTTTTTCCCCGGGATCCCCTCGGTCAACGGCACCATGCTTTTCCAGAACTTCCCACACCACGTCAACCCGGTCTCCCGTCAGCCCCAACCAGGCTGCCTTCCCCCAGAGGACCGCGTACCCGCACCAAGCCGTGCTGAACAGCAAGGTCTCCCcggtctcctcctcctcctcgtccgCCTGGAATAACCACCAGAACGCGGTGTGGAGCTCCGGCTCTAGTCCCTGGAGCGGCATGCAGGCGCCGCGGGACCCGCGCAGGGCGGTCGGGGTGGGAGTCGGTGTAGGAGTCGGTGTCGGGGTCCCGTCTCCCCTAAACCCCATCTCCCCCATGAAAAAGCCCTACCCGAGCAACGTTATCGCCCCGCCGAAATTCCCCCGGGCCGGACCCCTCAACCAGAAGCCCTGGATGGAGGACAACGCCTTTAGAACAGACAACAGCAACAACATGCTGCCGTTTCAGGACCGGAATCGGCCCTTTGATCCATTTAGCTTGCAAACTTTGGAGAATTCCCTAATGGATATGATAAGGACTGACCATGACAAAGGACGCATGGGTTTGAACTTTCACCACCCAGCAGCTGAACACATAATGCCACTGAgtCGCTCGTCACTGTTTCCTTTCGAGGATGGTTTTCTCGATGACCCTCATGGTGACCAGTCGCTGACCCCCGGACTGAACTCGCCCACTCGCTGTCAGAATGGCGAGAGGATGGAGCGCTACTCTAGGAAGGTGTTTGTTGGTGGACTGCCTCCAGACATTGATGAAGGTACATCCATAAAACCTCCTGTAGCAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU292606 lncRNA upstream 1622 11090351 ~ 11125544 (+) True G215577
TU292613 lncRNA upstream 21376 11105213 ~ 11105790 (+) True G215582
TU292600 lncRNA upstream 40693 11085409 ~ 11086473 (+) True G215574
TU292599 lncRNA upstream 43262 11081551 ~ 11083904 (+) True G215573
TU292587 lncRNA upstream 107108 11017410 ~ 11020058 (+) True G215564
TU292627 lncRNA downstream 26617 11201965 ~ 11223400 (+) True G215595
TU292767 lncRNA downstream 365860 11541208 ~ 11541531 (+) True G215698
XR_002651943.1 lncRNA downstream 432127 11607475 ~ 11610313 (+) True LOC111196005
XR_002651942.1 lncRNA downstream 432127 11607475 ~ 11610313 (+) False LOC111196005
TU292770 lncRNA downstream 435024 11610372 ~ 11611336 (+) False LOC111195936
XM_007258684.3 mRNA upstream 47292 11044038 ~ 11079874 (+) True ide
XM_022684613.1 mRNA upstream 47292 11044038 ~ 11079874 (+) False ide
XM_007258686.3 mRNA upstream 93290 11027680 ~ 11033876 (+) True sfxn4
XM_007258688.3 mRNA upstream 128137 10982695 ~ 10999029 (+) True tm9sf3
XM_007258690.3 mRNA upstream 146680 10971985 ~ 10980486 (+) True LOC103035174
XM_015602359.2 mRNA downstream 87271 11262619 ~ 11272978 (+) True LOC103038673
XM_022684802.1 mRNA downstream 211688 11387036 ~ 11533526 (+) True dntt
XM_022684429.1 mRNA downstream 434970 11610318 ~ 11612302 (+) False LOC111195936
XM_007228646.3 mRNA downstream 452818 11628166 ~ 11700412 (+) True LOC103039507
XM_022684801.1 mRNA downstream 1063023 12238371 ~ 12246879 (+) True cfap46
TU292521 other upstream 178879 10947079 ~ 10948287 (+) True G215513
TU292392 other upstream 544078 10575495 ~ 10583088 (+) True sprn
TU291737 other upstream 2165396 8958299 ~ 8961770 (+) False LOC103041196
TU291488 other upstream 3015841 8110948 ~ 8111325 (+) True G214773
XR_002651890.1 other upstream 3250048 7856162 ~ 7877118 (+) False LOC103021346
TU292927 other downstream 1030153 12205501 ~ 12206164 (+) True G215834
TU292989 other downstream 1535290 12710638 ~ 12715905 (+) True G215886
TU293202 other downstream 1916398 13091746 ~ 13104042 (+) True G216053
trnay-gua_10 other downstream 2139764 13315112 ~ 13315200 (+) True trnay-gua_10
trnay-gua_11 other downstream 2140727 13316075 ~ 13316162 (+) True trnay-gua_11

Expression Profile