RNA id: XM_022684427.1


Basic Information

Item Value
RNA id XM_022684427.1
length 4132
RNA type mRNA
GC content 0.49
exon number 10
gene id cpeb3
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 11125700 ~ 11195423 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAGAGGCACTGAGCCTCATTAGGAAACAGAAGGAAGACACAGCTATGAAGATACACATATGGCTGCAAAACACCTCGTACTGCGCTCGGCAAACCATGCAGGATGATTTACTGATGGACAAAAGCAAAGCCCAGGCTCACCAGCAGCAGCCAGACCCAGCACCGAGCACCGAGCCACCCTCCACCCCGACCCCCTCGTCGGAGCCGGCCGTCCCGGAGGACAGTCCGTCCGGCCAAGCCCCGTCGCGGCCGAGCGGCAAGGAGAAAGTGGCCATGGAGTCTCCGCTCCTTCCCGGCTTGAGCTTCCCCCAGCCGCCGCAGGAGACCGTGGGCAGCTCGCTGTGGTCCTCGCCGACCACCACCAACACCGTGGACGATAGCTTTTTCCCCGGGATCCCCTCGGTCAACGGCACCATGCTTTTCCAGAACTTCCCACACCACGTCAACCCGGTCTTCGGAGGGAGCTTTCCGCCTCAGATCGGCTTGGCTCAGTCTCAGCAGCACCAACCACCGCAGCAGCAAACCCAGCCTCagacccagcagcagcagcctcaaCCCCAGCCCCAGCCCCAGCCTCAACCGCAGCCTCAGCCCCAGCAGAGGCGGTCTCCCGTCAGCCCCAACCAGGCTGCCTTCCCCCAGAGGACCGCGTACCCGCACCAAGCCGTGCTGAACAGCAAGGTCTCCCcggtctcctcctcctcctcgtccgCCTGGAATAACCACCAGAACGCGGTGTGGAGCTCCGGCTCTAGTCCCTGGAGCGGCATGCAGGCGCCGCGGGACCCGCGCAGGGCGGTCGGGGTGGGAGTCGGTGTAGGAGTCGGTGTCGGGGTCCCGTCTCCCCTAAACCCCATCTCCCCCATGAAAAAGCCCTACCCGAGCAACGTTATCGCCCCGCCGAAATTCCCCCGGGCCGGACCCCTCAACCAGAAGCCCTGGATGGAGGACAACGCCTTTAGAACAGACAACAGCAACAACATGCTGCCGTTTCAGGACCGGAATCGGCCCTTTGATCCATTTAGCTTGCAAACTTTGGAGAATTCCCTAATGGATATGATAAGGACTGACCATGACAAAGGTAAACAACACCCTGTTGGGGGGCCCCCAATGACTATCGCTGATATTGTATGGAGGAATCATTTTGCAGGACGCATGGGTTTGAACTTTCACCACCCAGCAGCTGAACACATAATGCCACTGACCAGGAGCTATGGTCGCAGAAGAGgtCGCTCGTCACTGTTTCCTTTCGAGGATGGTTTTCTCGATGACCCTCATGGTGACCAGTCGCTGACCCCCGGACTGAACTCGCCCACTCGCTGTCAGAATGGCGAGAGGATGGAGCGCTACTCTAGGAAGGTGTTTGTTGGTGGACTGCCTCCAGACATTGATGAAGGTACATCCATAAAACCTCCTGTAGCAAAGAGAATGATGACCATAgcgtctctttctctctttctctgtttttgtttaggTTATGCCTTCCTGCTGTTTCAGGAGGAGAGCTCTGTTCAGGCTCTCATAGACGCCTGCATTGAAGAAGATGGAAAGCTGTACTTGTGTGTTTCCAGCCCCACAATCAAAGATAAACCAGTCCAAATCCGCCCGTGGAATCTGAGTGACAGTGACTTTGTGATGGATGGCTCTCAGCCTCTGGACCCCCGCAAGACCATCTTTGTTGGAGGGGTTCCACGACCTCTGCGTGCAGTGGAGTTGGCGATGATTATGGACAGGCTGTACGGAGGCGTGTGCTATGCTGGCATTGACACTGATCCTGAGCTAAAGTACCCTAAAGGGGCGGGCCGAGTGGCCTTCTCCAACCAACAGAGCTACATCGCTGCCATCAGCGCTCGATTCGTCCAATTGCAACACAACGACATCGACAAACGGGTGGAGGTGAAGCCGTACGTGCTGGACGACCAGATGTGTGATGAGTGTCAGGGTGCGCGCTGCGGGGGCAAGTTCGCCCCCTTCTTCTGTGCCAACGTCACCTGCCTGCAGTACTACTGCGAGTACTGCTGGGCCAGCATCCACTCCCGCGCCGGCCGCGAGTTCCACAAACCGCTGGTCAAAGAGGGAGGAGACCGGCCCCGCCACGTCTCTTTCCGCTGGAGCTGATGGAGGGAGGGGTCACTCCCCTCCAacccccctccaccaccaccacctcacACCGCCCCCACCCTCAACCGCAGCCCGGATCAGTGCTGACCACACCTTTCTCCCCACGCAACCGactaaccaccaccaccatcacgaCTACAAGCAACGACTACAGCTACAGAAGATAACCTGGTCTTTTATCCTTTTCTTTGTAGgaaaagaaaacaacacacataaaaaaaaaagataatcatCACAGCTCTTAATACCATTTTGTCCACTATACTCTCCACTCGCTAATGAACTTTCGGACGAATACGAAATGTGAGAGTCCTTCTGCTCAGAAATTGCACTTTGGCACACATGTACACAGACCACACTTGATGATATTGTTAGCTAGGTTGTGAGATtactgttcttttttaaatttatttttgttgttttatattttatttttaatttcctttttttttcctgatttggTCAGTCAGTGTTCCCTATAACCTATAGGATACCATTAGACAAGAGTGAGACTATAAACACACCAACATAaaacctatacacacacatatatatatatacatttatatatatatttaaaaaaaagaatatatttttattttgtatatatctataaacacaTAGATACTTTTGGATTTTTGTGAAAGGAGCATGCACTTATTTTCAGAGCTGATTAGAAGTAGAAGACTGCCCCTAGTAGAAGACAATAAGGGAgggaaagattaaaaaaaaaagtaccaaaGGTGAAAcgtatattaattattaataattttaatataattaacagtCTAAAATCTAAAGATATAATAGGTGATGTAGCAAAAGAAAATTCAGCAGTTCTATGACATTCTGTAGttttaaaaagcaaagaaattCACCCAAATTAAACAAGAACAATACACTTATTTGCAAATAGTACTATTATTAATACCTCATGTTCGCAAATCAGAtcagatatatttttttggtttcatttctttgttttcctTTGCTTATACTTTTTTaggcctttttatttttttttataatattattttttagtgtTATGTACATGTAATGCTGCAATAGCTTTTGCTGCTAAATCCATGGTATATGAACCTATACCATAGTACTTTATTCAGGCTAGGGTGTGGAGGAGACGAGGTAAAGGTAACGGCACCTGGTTGTGAGGTGGACAGGCTAGCACGGGAGGGGTGAAGAGGGGGTTCCCTTGCGCCCCTCCTGCCCCCAGGACCACCCTCTGTGGGGTCGGCGTTTGCCCCTTGAAACTGCATGTTTATCCAAATCAGGTTGCTGCATGCAATAGAAGTTTTAGTATCGAGTCTACTATTCAAGTCGGCCCACTTTTGCACACCATAGACGAACACACAAAGAGCACGAATATGAAAACTGGACaggagagagttagagagagagagagagagagagagggagaagccTGAAACCTGGcccgactctctctctctctctagctagCCAGAGCTGAGAGTGGAGAGTTTGGAGAGCGAGAGACTACACTGCGATTTACAAGGTAAATAAAATGCCTAGATGTAGGATAGCCTTCAAACACAACTGTCTCTATAGTAGGTGAAGAACATTTTTGCAGTGATTGTTGATTATATAATTGTGCaattttttatacagtaatgTAGTTAGGTTTGAGTATGCCTAGAACTGTGATTCGCTTTAACTGTTATTGATGTCTATCTAACACAAGTCCTGTGAAACTTCATACCCAGTgtatacagcacacacacacacacatatatacacacatacacacacagtttttcCCTGGTTATCGTCCCTGTCCCTTCCTTATTGTCTCTCTCAAACatacgcacgcacacacacacacacacacactagtttTGCTACTTCTCACTCGCACAGGATTTTAAGGACACAAAGTGTGAGCTTGACTCTGAGAACTTCAGACACTGAGTTCTCTGTGTgtaccaacatttttaaatacatctcCTCTTCCTTTGACCTGTCCaagaagataaaga

Function

GO: NA

KEGG:

id description
K02602 CPEB, ORB; cytoplasmic polyadenylation element-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU292606 lncRNA upstream 156 11090351 ~ 11125544 (+) True G215577
TU292613 lncRNA upstream 19910 11105213 ~ 11105790 (+) True G215582
TU292600 lncRNA upstream 39227 11085409 ~ 11086473 (+) True G215574
TU292599 lncRNA upstream 41796 11081551 ~ 11083904 (+) True G215573
TU292587 lncRNA upstream 105642 11017410 ~ 11020058 (+) True G215564
TU292627 lncRNA downstream 6542 11201965 ~ 11223400 (+) True G215595
TU292767 lncRNA downstream 345785 11541208 ~ 11541531 (+) True G215698
XR_002651943.1 lncRNA downstream 412052 11607475 ~ 11610313 (+) True LOC111196005
XR_002651942.1 lncRNA downstream 412052 11607475 ~ 11610313 (+) False LOC111196005
TU292770 lncRNA downstream 414949 11610372 ~ 11611336 (+) False LOC111195936
XM_007258684.3 mRNA upstream 45826 11044038 ~ 11079874 (+) True ide
XM_022684613.1 mRNA upstream 45826 11044038 ~ 11079874 (+) False ide
XM_007258686.3 mRNA upstream 91824 11027680 ~ 11033876 (+) True sfxn4
XM_007258688.3 mRNA upstream 126671 10982695 ~ 10999029 (+) True tm9sf3
XM_007258690.3 mRNA upstream 145214 10971985 ~ 10980486 (+) True LOC103035174
XM_015602359.2 mRNA downstream 67196 11262619 ~ 11272978 (+) True LOC103038673
XM_022684802.1 mRNA downstream 191613 11387036 ~ 11533526 (+) True dntt
XM_022684429.1 mRNA downstream 414895 11610318 ~ 11612302 (+) False LOC111195936
XM_007228646.3 mRNA downstream 432743 11628166 ~ 11700412 (+) True LOC103039507
XM_022684801.1 mRNA downstream 1042948 12238371 ~ 12246879 (+) True cfap46
TU292521 other upstream 177413 10947079 ~ 10948287 (+) True G215513
TU292392 other upstream 542612 10575495 ~ 10583088 (+) True sprn
TU291737 other upstream 2163930 8958299 ~ 8961770 (+) False LOC103041196
TU291488 other upstream 3014375 8110948 ~ 8111325 (+) True G214773
XR_002651890.1 other upstream 3248582 7856162 ~ 7877118 (+) False LOC103021346
TU292927 other downstream 1010078 12205501 ~ 12206164 (+) True G215834
TU292989 other downstream 1515215 12710638 ~ 12715905 (+) True G215886
TU293202 other downstream 1896323 13091746 ~ 13104042 (+) True G216053
trnay-gua_10 other downstream 2119689 13315112 ~ 13315200 (+) True trnay-gua_10
trnay-gua_11 other downstream 2120652 13316075 ~ 13316162 (+) True trnay-gua_11

Expression Profile