RNA id: TU292978


Basic Information

Item Value
RNA id TU292978
length 2700
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G215880
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 12765306 ~ 12768025 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cCTTTGCtaaatataataacaaaaaaagcaatcTAGGTGTGAGTGCCTAGCATGTACGTACTTGAAAAGGCATGGACTATGTATTTGTtcacagaaataaacaaaaaataaacataataagaaAAGATTACATATAAAACCgttcattaaaacaaaacaaaaaggcaACTGTACTgcgaataaaatgtaaaataaacaacagtaaATATTCCTTCATGTCCTAGGCACTTGTGGTCTTTACAGTTGGTAGCGACCACTGAAATGTCCAACAGCCTACAACACTTCCCAAACTGCAAAATGAGATGTTACAATGGGTTGAATACATACATCTGTATAAAAGGATCACAGAGTACCTTCCTTAAAAAAACACgtataaaaaaagacagaacCTTCATCGCCAGTGAAGGCTCTCGTACGACcttctacattaaaataataagctgttatataaaatgacattttaagtGAAATTAGTGCACGGTCTCTGTATTAATGAGTGTAACTAGGACTTTGCCAAGCAAGTACTGTAATTACAGTGATGTGGTTATAAAACGCCGCTATGCAGAAATCTCGAATACATTGTTTATCATGGCTTAAGGAGTTTAGGCAATAAGATGTATTGCAAGTTCTCTCCATTGGAATATTATTGTCCCATATGAGCACCTCAAGGTAAAAAGAAACaggtaaatattaaaaatattcattaaGTACAATCAGAAAACCTCTCATTCTCCTTTcagcaacaaacacacaaaccacattCAGTATGTATTCACTGGctttttttcaatttgttttttgttctttcaaTCGCTAACCTGACACTGACGGAGAGTCCAGAGCTTACAGCTAAGTAACAGGCCATCACCCTTCATAACACACCTCTATTGGATTTACAGAACTGTGCACAAGTCAGAGACCATCCTTCCTTTACTTAATTTCCAGGCAAAATGTCCGTTAAAGAGTCACTTTAATACCTCAAGACAAAAAAGAATACATATTTATCAGAAATCAAGCCTTAACCTAAATatactgttttaatatttagtgtgcaCACCCTGCCTCAATGTTTAGGTGATTCAAGTTATTAATTTTTTGGGAGACATTTCTGAATATAGGGGTTGTCTTGCCTCGCAACAAAAGATTTAGAATGGGCTCTAGACCCACCATGACCCTGACCACAAAGTAAGAAATAGAGGATGAAGATGGATGGACAATTTGGCAGAAATTAGATACAAACTAGAAAATGCATTTCCTGAACTGCAAGTGTGACTGCAGCTCAGCAGCACTACTAATACATAAGATAAAATTGGTTGTCCaggtgttgcaaagtggttactaaggtgttaaCAAGGGGATGCTGAGGAGTTCCTAggcatttaaaaatgtgttgccATAATACAAATGGTTGCAAAGGTGTAGGTTAGTTTGAAATACGATTGTTAAAACAGGACTCTTAACAAATATGCAAGATCTTCTGGACTACCAACTCTGTCCCCATCAGATAAACTGATGCTATAACTCCTCAGTTGTAGTAGAGAGAACAATATTAAGCTTCACTCTAATTTCAGATCTtggtgtgaattttttttttaaaaagctctaatactgagacagaaaaaaacagaatagtGGACTGAGCACACCTAAGTTCAGACCTCAATATTACTGAAACTGTTTGACATGActtgaatataaaataaaagcagatttACTAAATACTGAAACGTCATATTGTATTTAGTGGTTGGAGCTTCTGTATGATTGTAAATATAAATCTGCTTTGCTTTTCCTGATGTTAAATTATGAATAACTTGCACTTATTGACTCTGaataaagtaaacaaataaaataaaataaatgttttctgaCTTTTGCACAGTAATGTATATACCAATGCAAAACTCAAGCAtgagcacatacacacacacacacgcacacgcaaacgcaaacacgcgcacacacacacacacacacttacatacataaCCAAAACATAACAAATATGCACAGCAACTTCAAGTCCTTGAGCCAAATATTAGCATGTTGTTGAGTCCAGCATTGTCAATGGCCTTTTGGGTTAAAGCCAGCTTGTGGGTTTCCACCCCTGACGTTGATGTGTTGGGATTGTCCTGCGCTGGCAGAGGTGAAAAGTTGAGGTCAAAGGTCGTACCCCTTGTAGAGGTAGCTCCTAGAAGTGCCTGAGGCTCCAGAGACGAAGAGGAGGAAGAATCTCAGGGTAGAAGAGACGCAAAACGAAGATCTAAGCGTAAACAGGCCATCGAAGGGGCAACAGGGTGTCCTTTCATGCCACGGTTAAGGCAAATAAAACTCTCTGGggtcctcacacacacacccacacacgcaCGCATACAGACGCAAACCAATACCGACAAATTGCCCTGATATCAACTTCTCCGtctgtcactcacacactcttgcTCCCTGAAATGTGTGGGACCCAGTCTGAGTGAGTCTGTGATTGTATCAGAGCAGAAATGGACAGATTTGGCTCCACCATATTGAGTGGAATGAGTTGCAGATGTGCTCCTCACACCTTGCTGTCCAGAGGAATGTCCCCCAGGGCCAGGACCAGCTCGCTGAATGATGGCCTCTCCTTAGGGCTGGGAGCCCAGCAGCGGCTCATCAGTTTGTAGATTTTTGAAGAACAGGCGTCAGGAGCAGAAAGCTTCAGAGTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU292937 lncRNA upstream 507171 12255862 ~ 12258135 (+) True G215843
TU292854 lncRNA upstream 664636 12099785 ~ 12100670 (+) True G215771
TU292802 lncRNA upstream 918375 11811659 ~ 11846931 (+) True G215725
TU292794 lncRNA upstream 1025907 11737601 ~ 11739399 (+) True LOC111195984
XR_002651922.1 lncRNA upstream 1025936 11737808 ~ 11739370 (+) False LOC111195984
TU293036 lncRNA downstream 152275 12920300 ~ 12922979 (+) True G215926
TU293030 lncRNA downstream 169433 12937458 ~ 12963981 (+) True G215921
TU293046 lncRNA downstream 187375 12955400 ~ 12956296 (+) True G215929
TU293047 lncRNA downstream 201234 12969259 ~ 12972996 (+) True G215930
TU293061 lncRNA downstream 236222 13004247 ~ 13009722 (+) True G215944
XM_007248505.3 mRNA upstream 60118 12696124 ~ 12705188 (+) False LOC103045242
XM_007248504.3 mRNA upstream 60118 12696393 ~ 12705188 (+) True LOC103045242
XM_015605671.2 mRNA upstream 85638 12551306 ~ 12679668 (+) True stk32c
XM_007248502.3 mRNA upstream 511745 12250834 ~ 12253561 (+) True nkx6-2
XM_022684801.1 mRNA upstream 518427 12238371 ~ 12246879 (+) True cfap46
XM_022684646.1 mRNA downstream 205586 12973611 ~ 12979567 (+) True atp5s
XM_007248527.3 mRNA downstream 283842 13051867 ~ 13068228 (+) True atl1
XM_007248539.3 mRNA downstream 429125 13197150 ~ 13203195 (+) True tmx1
XM_015605668.2 mRNA downstream 503391 13271416 ~ 13299019 (+) True frmd6
XM_022684430.1 mRNA downstream 540012 13308037 ~ 13312443 (+) False LOC103038358
TU292989 other upstream 49401 12710638 ~ 12715905 (+) True G215886
TU292927 other upstream 559142 12205501 ~ 12206164 (+) True G215834
TU292602 other upstream 1589958 11127166 ~ 11175348 (+) False cpeb3
TU292603 other upstream 1589958 11129370 ~ 11175348 (+) False cpeb3
TU292521 other upstream 1817019 10947079 ~ 10948287 (+) True G215513
TU293202 other downstream 323721 13091746 ~ 13104042 (+) True G216053
trnay-gua_10 other downstream 547087 13315112 ~ 13315200 (+) True trnay-gua_10
trnay-gua_11 other downstream 548050 13316075 ~ 13316162 (+) True trnay-gua_11
trnat-ugu_90 other downstream 579536 13347561 ~ 13347633 (+) True trnat-ugu_90
TU294489 other downstream 4236570 17004595 ~ 17007537 (+) True borcs7

Expression Profile