RNA id: TU293036


Basic Information

Item Value
RNA id TU293036
length 2648
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G215926
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 12920300 ~ 12922979 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

caaTGAAGGAcagcttaataaataatacacattCCACTAAACACAACAATATCGTCTATTATAATAACATGATATATGTTTGTTCACTTTCACACCCTTCGCTACCCCTGGGAAGTCTTTTGGCGAGACTTTGTGATGTGCATGTGTCCGTGAAGAGGAGGAATAGGAATGGTGCATCAATGGTGGATGAATGAAAGATGAAAAGGTGTTCAGCTCCATAAACAGAACTACACTGGAGCAGTGCTGATATTCCATTCGGTTTACTAGCTGAACCTTAGTGTCCTATACTTTTACTTAGGTGTGCGGCTTATCATTAAAGCCAATGAATCCTGGGcctatttttttccttaatgtGACATAGATGTGATTTTTTTCAGGACAGTTGTGTTCATGTCTTGATCTTTcctaatcagatttgagtcattttCAGACATGCATATTTGATTCAATGACACTTGAATTGTAAACAGATCATCTATCTACAAATGCTTTAGTGCGGTCATAATCAGTGAGCACTGTAGTGTCTAATTCAGACTCCCCACCAGGATCAGACTCCCCTTCATGCAGCAGTATGGAAACAACAGATTGAGCTGACGATTCTGGTTAATTCtgataatgaataaatattattatttagtttgctTTCGTTTACGTCGTTAAAGTGCAGTCTGATTCTGATTGAGTCAAAATTTGAAAAACACTAGCAGCACAGCAAAACACCAGAGTAGGCCAGTCACAGTAAGTGTGTTACCGACttttttgtacaatatatgaatataattgTTCTatcgaccaaaaaaaaaaaaaaaaaaaaaaaaaacacgtttatcatgacaggcctacaaCAAAGGCAATGTGCATAAACGTATTGGTGAGAGCTTGCATGCCATTTCAGGGGCATATTTGTTCTCATTATAGACAGAAGTGGTTTggttacatttatatatgtgaACCATCACAATTGCTTAGATAAGAttagatttaaaatatttaatttaatgtgaacgtagccatgtttctctctcttttttttgttgaaaaaacGTGTTTGCATGaagttctgtatctctcagtaTATTTTGTTTTCGTTAGGTAAATGTAAAAAGATCAAGAGGTTTGTACAGGCCCTGCTGTCATTTTCTGGAGCAGGCATGGGTAATGTGATCTCAAATAAGCATTTTCATACTGTTCATAGCGGGTAACTGAGCTCAGCCACAGCTGCAGGCCTGTACAGACCGACTTAGCTGGTCTATACTGATATTAGAGTGCTATGCGTTTTCcttgttctgctgctgctgctacaacAATAAGATACAAATACACTCAGTACACAAATGCAGTTCAACCAAAAAAGAAAGTGACCTTTGCGTCAACAAACGCTGCTTTGATTCTTAAATTAGAGTTAAATGAAGTCTTAAGTCTTTGTCATTCCCTTTTTAATGCTTCGCTACACTGGTAAACATTAACGTTAAATACTAACTACACAAAGCAGGATCAGCCAAGATGCTGCCTGTTGGCACGCCAGCTCGTGAAAAAGGTAGGGTGCTGGGGGTGGACGTGCCTGTGGCTATGCTAAAGTCAGCAGTTTGGtgcttattcattcattcactgatGCTGAAATACGACTGCAGCCCGGCCTCTCGAGCAGGTGACTGAGAATCAATTCATCGACTCAGCTTAGCTTTACCAAGCATGTGTTTCAAAACCAAAGACACTGCAAGCTTTcagaaacactgtaaacataaatgaataaaatcaacACTTaagtacaataataatattaataataatatcagaGGAGCGTGATTAACTCCATACCATATAACCCAACCCGCAGCCCCCTGACCctccaaaaaaaatgttatataaataatttaaaaaaaggttacagACGTAACTGTGTCACCGCCTTTTTGCAAATTAAAACCTTGCAAACAATAATGAAaacttcatatttaaaaaaaatcaaattaaaattacaGGCACCTAGgtcataagaaaaaaaagagcacaaTTTGACACACTGGCAGAAATGATCTGTTCAATGTAGGCCACTCAAATAGAATATTACAAACAAAGGCCATTCACTGTAAAtctgaaaaagaataaaaaacaaagcaacTCCAGATGGCACAATACGAGTCAAATTCCTAATGCAATACTGTGAGGCATTGAGACTAACAGAGCCCACCTTCTTgaagaaaacacagcaaaagaacagaaaaaagaagcaTGTGTGATCTGTTTAGAACAAAAGATCACTTCACAGAGCTAATACTGAGACTGCTTAGATAAAGAGGTGAAGATCTGAAATAAAAAGCCAAAcgagaaaaaagaaacagagtaAAGGAGCCAAGAaagagacaacacacacacacaaagtgagAAATATGTTCTGGAAGATAATAGGAGAAGAGAAGGATAAGTGataaataaaaaaaagaaaagaaaaagagcaaaaagcACACGTCCCAAAATTTCTCATTGAACAGGTGAAAGCATCAGGGAGCATCTCTCCGAAGACACCAGGAATGGAACAGGATGATTCTGCAGATGGGCAATTAAGAGACCATAGGGAACAAGAACATCCTTTTGCTATGTGATGGGGGAGGGAGAGAAGGGTGGAGGAAAAATCTTGATGGCTTATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU292978 lncRNA upstream 152275 12765306 ~ 12768025 (+) True G215880
TU292979 lncRNA upstream 152275 12765306 ~ 12768025 (+) False G215880
TU292937 lncRNA upstream 662165 12255862 ~ 12258135 (+) True G215843
TU292854 lncRNA upstream 819630 12099785 ~ 12100670 (+) True G215771
TU292802 lncRNA upstream 1073369 11811659 ~ 11846931 (+) True G215725
TU293030 lncRNA downstream 14479 12937458 ~ 12963981 (+) True G215921
TU293046 lncRNA downstream 32421 12955400 ~ 12956296 (+) True G215929
TU293047 lncRNA downstream 46280 12969259 ~ 12972996 (+) True G215930
TU293061 lncRNA downstream 81268 13004247 ~ 13009722 (+) True G215944
TU293068 lncRNA downstream 105286 13028265 ~ 13050474 (+) True G215951
XM_007248505.3 mRNA upstream 215112 12696124 ~ 12705188 (+) False LOC103045242
XM_007248504.3 mRNA upstream 215112 12696393 ~ 12705188 (+) True LOC103045242
XM_015605671.2 mRNA upstream 240632 12551306 ~ 12679668 (+) True stk32c
XM_007248502.3 mRNA upstream 666739 12250834 ~ 12253561 (+) True nkx6-2
XM_022684801.1 mRNA upstream 673421 12238371 ~ 12246879 (+) True cfap46
XM_022684646.1 mRNA downstream 50632 12973611 ~ 12979567 (+) True atp5s
XM_007248527.3 mRNA downstream 128888 13051867 ~ 13068228 (+) True atl1
XM_007248539.3 mRNA downstream 274171 13197150 ~ 13203195 (+) True tmx1
XM_015605668.2 mRNA downstream 348437 13271416 ~ 13299019 (+) True frmd6
XM_022684430.1 mRNA downstream 385058 13308037 ~ 13312443 (+) False LOC103038358
TU292989 other upstream 204395 12710638 ~ 12715905 (+) True G215886
TU292927 other upstream 714136 12205501 ~ 12206164 (+) True G215834
TU292602 other upstream 1744952 11127166 ~ 11175348 (+) False cpeb3
TU292603 other upstream 1744952 11129370 ~ 11175348 (+) False cpeb3
TU292521 other upstream 1972013 10947079 ~ 10948287 (+) True G215513
TU293202 other downstream 168767 13091746 ~ 13104042 (+) True G216053
trnay-gua_10 other downstream 392133 13315112 ~ 13315200 (+) True trnay-gua_10
trnay-gua_11 other downstream 393096 13316075 ~ 13316162 (+) True trnay-gua_11
trnat-ugu_90 other downstream 424582 13347561 ~ 13347633 (+) True trnat-ugu_90
TU294489 other downstream 4081616 17004595 ~ 17007537 (+) True borcs7

Expression Profile