RNA id: TU293209


Basic Information

Item Value
RNA id TU293209
length 465
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G216059
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 13127926 ~ 13132520 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tatatatatatatatcttatatatatatctttttttacagtctctggtttagtGTATTCAGCCTATAATACACTAATCAAGCGTTTCATGATGACCATTTCCTTGTTATTAcacaccttttttattttttcttcatcacTAACTATAGAGGAGCACTTTGTAAGTTTATTATCAcagacagatttctttctttctctctgaatACTTCATTATCCTCCTTTGTTGTGCTGGCATGAGTGGATTAGACaatcatatgtgtgtgtaagtgtgtgtgtgtttaaagtacATACGGTTGTACATAGTGATGACATGGAGGCAGTTGAGGAGCTGTCTCTTGTACTCATGGATTCTCTTTACATGCACATCAAACATGGAAGCAGGATTTATCTTCACCTGGTATTCTTTCTCCAAATACTGCGCAAACTTCAGCTTATTGTCCTAAAGTCACATAGACACAAGCATGTA

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU293204 lncRNA upstream 3168 13120336 ~ 13124758 (+) True G216054
TU293201 lncRNA upstream 36693 13089461 ~ 13091233 (+) True G216052
TU293068 lncRNA upstream 77452 13028265 ~ 13050474 (+) True G215951
TU293061 lncRNA upstream 118204 13004247 ~ 13009722 (+) True G215944
TU293047 lncRNA upstream 154930 12969259 ~ 12972996 (+) True G215930
TU293215 lncRNA downstream 6724 13139244 ~ 13143391 (+) True G216064
TU293242 lncRNA downstream 72789 13205309 ~ 13237853 (+) False G216073
TU293246 lncRNA downstream 92289 13224809 ~ 13225105 (+) True G216077
TU293237 lncRNA downstream 103394 13235914 ~ 13237853 (+) True G216073
TU293240 lncRNA downstream 103394 13235914 ~ 13237853 (+) False G216073
XM_007248527.3 mRNA upstream 59698 13051867 ~ 13068228 (+) True atl1
XM_022684646.1 mRNA upstream 148359 12973611 ~ 12979567 (+) True atp5s
XM_007248505.3 mRNA upstream 422738 12696124 ~ 12705188 (+) False LOC103045242
XM_007248504.3 mRNA upstream 422738 12696393 ~ 12705188 (+) True LOC103045242
XM_015605671.2 mRNA upstream 448258 12551306 ~ 12679668 (+) True stk32c
XM_007248539.3 mRNA downstream 64630 13197150 ~ 13203195 (+) True tmx1
XM_015605668.2 mRNA downstream 138896 13271416 ~ 13299019 (+) True frmd6
XM_022684430.1 mRNA downstream 175517 13308037 ~ 13312443 (+) False LOC103038358
XM_022684651.1 mRNA downstream 249353 13381873 ~ 13393037 (+) True abcb10
XM_007248551.3 mRNA downstream 265261 13397781 ~ 13401639 (+) True LOC103031709
TU293202 other upstream 23884 13091746 ~ 13104042 (+) True G216053
TU292989 other upstream 412021 12710638 ~ 12715905 (+) True G215886
TU292927 other upstream 921762 12205501 ~ 12206164 (+) True G215834
TU292602 other upstream 1952578 11127166 ~ 11175348 (+) False cpeb3
trnay-gua_10 other downstream 182592 13315112 ~ 13315200 (+) True trnay-gua_10
trnay-gua_11 other downstream 183555 13316075 ~ 13316162 (+) True trnay-gua_11
trnat-ugu_90 other downstream 215041 13347561 ~ 13347633 (+) True trnat-ugu_90
TU294489 other downstream 3872075 17004595 ~ 17007537 (+) True borcs7
XR_002651919.1 other downstream 4034498 17167018 ~ 17175733 (+) False LOC111195981

Expression Profile