RNA id: TU293215



Basic Information


Item Value
RNA id TU293215
length 1717
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id G216064
representative True

Chromosome Information


Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 13139244 ~ 13143391 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


AGTCCCGAAGGTTGAAGTCGTTTGGAGCACGTGCTGACCACAGCCTCATGGTGTTCACAGTGTTGTTCATGTAGCCAGGAATAGGTGTGTCATAGGGCATGGCCAAAACCACGCGTATCAACCCATTTTGATCCCTCCTCAGTCTCCTCAACTCGTCCATAGAAATGCACAGGCAGCATGTACTCAGGGCGGGCTTTCTCCCATGGGTTTCCATGCCTCAGCCAATCATCAGCCTCCTCCACCTAACAGCCAGGTCATACCTGCCAGCCATCTTTGATTCTCTGGTTGAAGATCCCGTATTCATAACGGATGCCATAACCATATGCAGCAAGACCCAGCGTTGCCATTGAGTCTAAGAAACAAGCTGTGGAAAGCACATACACAGTGATGAACATCAACTGCCTTGGTTTAGTGCCCTGAACTGAATGTGAGGAATATAGTTAACCCTATTAGCACTGAAACTAGATACCAGAGAGTCCCTGACCTGTAAAAATATCAACAGAAGAAACATTACATTTTGGCTACGGTAATCAGAACTGATCAGCTTTTGTAATGGGTCTGGAACAGTTAGTTTTACTGAGAACGCAGCTATGTGAATGATTAGGGCTGGGTTTTCTAAAGGCATCTAAGCACAAAGATGAACCTTAAATGTTAAGCAAACACTCtactacacacactctttaaaagcaaaaataattttaacaatATGATGATTTTAAGAAACTGGGCCCAGATTGGTCACCCACTACTTTCTATGTAAACAAACATTGGCGTACGTGTGCATATGTGTTTAGTGCGTTGTAGCGTGTGTTGAATTTCTGGCCTACTTTATCCTACCCTCCATATATATATCCTAATCACACTTGAACAGAGAGAGGCTGACACTGCTGGAGCCTTGTATTCTTCACACTTTGGGGACAAAGGGGCTTCTAAATGAGAGTAACAGCAGCTCAGGAATGTAGGGCactaaaggggacatattatgaaACACTTGTGCACATACACTTGGGTATCTGAAGTGCTTAACCAACCcccaaactttaaaataaactttttagcttttttgtgGCAATTAATTGCATCCTCGAAGTCACTCCAGTTGTTGGTTGCATTTCTCAGCTGTATATAAAGGATCCTTCACTTTAGAACAGCCTTCTACTCTGTAGTGGCTGAGAAACGCAGCCCACCTTGGCTGCAGTCTAGACTTTAAAGCACAGCTATTGATTTAATGACTGTATTTGGTCTTTTGGTGCTGGATAAGCAGCAGCTTTTGTTGATGTTTCCTCTCTGACCTGCAAAAAAAGACCAGGATTTTGCCCTCTGCTCAAGAAATCCCATTAGCATAGCTGGTGTTGTAACGCTCCAAAAAGAGCCATATTTCACAGAGTAAATTATAGCGTAAAACATCATATAAACCCTGAATAAAAGTGCTATTGattgtattttaatctcagttaaCTTTCAAAGAACCCTAGTAGACTAGAAAGAACAgaaagtaaaatagtaaaatcttTGAACAATAACTGGAGGGTAGACTGTATAAATAATGAGGTGGATGTGTCCACTCCTGTCCCTACACTGTTTGCAGAGGGAAAGGGAGAAGGGAAAAGAGAGTGAAGAGTGAACAGTGCAGAGTGTGAGACCTGCCAACCGGCCCAGTCCTCCGTTCCCTAATCCAGCATCCTCCTCCATATCCTCCAAATCCTCCATATCCAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU293209 lncRNA upstream 6724 13127926 ~ 13132520 (+) True G216059
TU293208 lncRNA upstream 10286 13128294 ~ 13128958 (+) True G216058
TU293204 lncRNA upstream 14486 13120336 ~ 13124758 (+) True G216054
TU293201 lncRNA upstream 48011 13089461 ~ 13091233 (+) True G216052
TU293068 lncRNA upstream 88770 13028265 ~ 13050474 (+) True G215951
TU293242 lncRNA downstream 61918 13205309 ~ 13237853 (+) False G216073
TU293246 lncRNA downstream 81418 13224809 ~ 13225105 (+) True G216077
TU293237 lncRNA downstream 92523 13235914 ~ 13237853 (+) True G216073
TU293240 lncRNA downstream 92523 13235914 ~ 13237853 (+) False G216073
TU293236 lncRNA downstream 92567 13235958 ~ 13237853 (+) False G216073
XM_007248527.3 mRNA upstream 71016 13051867 ~ 13068228 (+) True atl1
XM_022684646.1 mRNA upstream 159677 12973611 ~ 12979567 (+) True atp5s
XM_007248505.3 mRNA upstream 434056 12696124 ~ 12705188 (+) False LOC103045242
XM_007248504.3 mRNA upstream 434056 12696393 ~ 12705188 (+) True LOC103045242
XM_015605671.2 mRNA upstream 459576 12551306 ~ 12679668 (+) True stk32c
XM_007248539.3 mRNA downstream 53759 13197150 ~ 13203195 (+) True tmx1
XM_015605668.2 mRNA downstream 128025 13271416 ~ 13299019 (+) True frmd6
XM_022684430.1 mRNA downstream 164646 13308037 ~ 13312443 (+) False LOC103038358
XM_022684651.1 mRNA downstream 238482 13381873 ~ 13393037 (+) True abcb10
XM_007248551.3 mRNA downstream 254390 13397781 ~ 13401639 (+) True LOC103031709
TU293202 other upstream 35202 13091746 ~ 13104042 (+) True G216053
TU292989 other upstream 423339 12710638 ~ 12715905 (+) True G215886
TU292927 other upstream 933080 12205501 ~ 12206164 (+) True G215834
TU292602 other upstream 1963896 11127166 ~ 11175348 (+) False cpeb3
trnay-gua_10 other downstream 171721 13315112 ~ 13315200 (+) True trnay-gua_10
trnay-gua_11 other downstream 172684 13316075 ~ 13316162 (+) True trnay-gua_11
trnat-ugu_90 other downstream 204170 13347561 ~ 13347633 (+) True trnat-ugu_90
TU294489 other downstream 3861204 17004595 ~ 17007537 (+) True borcs7
XR_002651919.1 other downstream 4023627 17167018 ~ 17175733 (+) False LOC111195981

Expression Profile