RNA id: TU293246


Basic Information

Item Value
RNA id TU293246
length 219
lncRNA type inter_gene
GC content 0.64
exon number 2
gene id G216077
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 13224809 ~ 13225105 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cgcctcctcgtccacCCTGCACCTCCATCCTGACAGAAGGATCGACCTCAAAAATGGACGCAGTAAACCGGTGGCATGCTGCtcggaaggcggacctggagtTTCTCCGCCTCCGCGCCGAGCAAATCCGGGGAGATGACCCGTGGACCGGCTCCAGGTTGGCGATTCGCCACGCTCCATGCGGGACCCCGGCattggaatccccgaggcctaAGCGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU293215 lncRNA upstream 81418 13139244 ~ 13143391 (+) True G216064
TU293209 lncRNA upstream 92289 13127926 ~ 13132520 (+) True G216059
TU293208 lncRNA upstream 95851 13128294 ~ 13128958 (+) True G216058
TU293204 lncRNA upstream 100051 13120336 ~ 13124758 (+) True G216054
TU293201 lncRNA upstream 133576 13089461 ~ 13091233 (+) True G216052
TU293237 lncRNA downstream 10809 13235914 ~ 13237853 (+) True G216073
TU293240 lncRNA downstream 10809 13235914 ~ 13237853 (+) False G216073
TU293236 lncRNA downstream 10853 13235958 ~ 13237853 (+) False G216073
TU293294 lncRNA downstream 76280 13301385 ~ 13302047 (+) True G216100
TU293297 lncRNA downstream 84198 13309303 ~ 13312487 (+) True LOC103038358
XM_007248539.3 mRNA upstream 21614 13197150 ~ 13203195 (+) True tmx1
XM_007248527.3 mRNA upstream 156581 13051867 ~ 13068228 (+) True atl1
XM_022684646.1 mRNA upstream 245242 12973611 ~ 12979567 (+) True atp5s
XM_007248505.3 mRNA upstream 519621 12696124 ~ 12705188 (+) False LOC103045242
XM_015605668.2 mRNA downstream 46311 13271416 ~ 13299019 (+) True frmd6
XM_022684430.1 mRNA downstream 82932 13308037 ~ 13312443 (+) False LOC103038358
XM_022684651.1 mRNA downstream 156768 13381873 ~ 13393037 (+) True abcb10
XM_007248551.3 mRNA downstream 172676 13397781 ~ 13401639 (+) True LOC103031709
XM_007248552.2 mRNA downstream 178503 13403608 ~ 13409451 (+) False LOC103032026
TU293202 other upstream 120767 13091746 ~ 13104042 (+) True G216053
TU292989 other upstream 508904 12710638 ~ 12715905 (+) True G215886
TU292927 other upstream 1018645 12205501 ~ 12206164 (+) True G215834
TU292602 other upstream 2049461 11127166 ~ 11175348 (+) False cpeb3
trnay-gua_10 other downstream 90007 13315112 ~ 13315200 (+) True trnay-gua_10
trnay-gua_11 other downstream 90970 13316075 ~ 13316162 (+) True trnay-gua_11
trnat-ugu_90 other downstream 122456 13347561 ~ 13347633 (+) True trnat-ugu_90
TU294489 other downstream 3779490 17004595 ~ 17007537 (+) True borcs7
XR_002651919.1 other downstream 3941913 17167018 ~ 17175733 (+) False LOC111195981

Expression Profile