RNA id: TU293347


Basic Information

Item Value
RNA id TU293347
length 283
lncRNA type intronic
GC content 0.53
exon number 1
gene id G216143
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 13479744 ~ 13480026 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttttaatactgccggcgtactgtcaggaagctacctgacagtttttaatagtgccggcaaactgtcaggaagctacctgacagtttttaatagtgcctgcgtactgtcagcaagctccctgacagtttttaatagtgccggcgtactgtcagcaagctccctgacagtttttagtactgCCGGGTATGTGCCTGACACTGCCGGGTCGATGAAAAAGTGGCTGGCGGGTGACGTCACGCAGACCCACCACTGCCGCCCGTCTCCCGTCAAGCAGAGATCCAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU293345 lncRNA upstream 4408 13475136 ~ 13475336 (+) True G216141
TU293343 lncRNA upstream 5631 13473379 ~ 13474113 (+) True G216139
TU293340 lncRNA upstream 8329 13465710 ~ 13471415 (+) True G216138
TU293297 lncRNA upstream 167257 13309303 ~ 13312487 (+) True LOC103038358
TU293294 lncRNA upstream 177697 13301385 ~ 13302047 (+) True G216100
TU293350 lncRNA downstream 480 13480506 ~ 13484360 (+) True LOC103033819
TU293360 lncRNA downstream 28836 13508862 ~ 13510402 (+) True G216153
TU293372 lncRNA downstream 51150 13531176 ~ 13531577 (+) True G216165
TU293382 lncRNA downstream 82461 13562487 ~ 13562709 (+) True G216175
TU293519 lncRNA downstream 235977 13716003 ~ 13716515 (+) True G216278
XM_007248557.3 mRNA upstream 14770 13462329 ~ 13464974 (+) True pdcd2
XM_022684653.1 mRNA upstream 14770 13462329 ~ 13464974 (+) False pdcd2
XM_007248552.2 mRNA upstream 70293 13403608 ~ 13409451 (+) False LOC103032026
XM_007248553.3 mRNA upstream 70293 13403805 ~ 13409451 (+) True LOC103032026
XM_007248551.3 mRNA upstream 78105 13397781 ~ 13401639 (+) True LOC103031709
XM_007248563.3 mRNA downstream 5494 13485520 ~ 13494058 (+) True LOC103035225
XM_022684658.1 mRNA downstream 61923 13541949 ~ 13594514 (+) False sertad2
XM_007248566.3 mRNA downstream 61923 13541949 ~ 13594514 (+) False sertad2
XM_007248565.3 mRNA downstream 95786 13575812 ~ 13594514 (+) True sertad2
XM_007248564.3 mRNA downstream 95787 13575813 ~ 13594514 (+) False sertad2
trnat-ugu_90 other upstream 132111 13347561 ~ 13347633 (+) True trnat-ugu_90
trnay-gua_11 other upstream 163582 13316075 ~ 13316162 (+) True trnay-gua_11
trnay-gua_10 other upstream 164544 13315112 ~ 13315200 (+) True trnay-gua_10
TU293202 other upstream 375702 13091746 ~ 13104042 (+) True G216053
TU292989 other upstream 763839 12710638 ~ 12715905 (+) True G215886
TU294489 other downstream 3524569 17004595 ~ 17007537 (+) True borcs7
XR_002651919.1 other downstream 3686992 17167018 ~ 17175733 (+) False LOC111195981
TU294912 other downstream 4831880 18311906 ~ 18316824 (+) False eif4ebp2
TU294985 other downstream 5263207 18743233 ~ 18744231 (+) False LOC103030769
TU295009 other downstream 5357336 18837362 ~ 18847028 (+) False cxcl12

Expression Profile