RNA id: TU293382


Basic Information

Item Value
RNA id TU293382
length 223
lncRNA type intronic
GC content 0.34
exon number 1
gene id G216175
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 13562487 ~ 13562709 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgtatttattgttcattaacgtcattgtgatatcccagtgattcctctgtcactgaggacccacattcctgcacattttattgtttttgtaacacattacctgctccaggaccagtgtatattatggaggggtttttttttcaataagattcataagccagaagcagaaatttttataattcaaatcgttttgaatcaaaaatcgattttgaatcgaatcgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU293372 lncRNA upstream 30910 13531176 ~ 13531577 (+) True G216165
TU293360 lncRNA upstream 52085 13508862 ~ 13510402 (+) True G216153
TU293350 lncRNA upstream 78127 13480506 ~ 13484360 (+) True LOC103033819
TU293347 lncRNA upstream 82461 13479744 ~ 13480026 (+) True G216143
TU293345 lncRNA upstream 87151 13475136 ~ 13475336 (+) True G216141
TU293519 lncRNA downstream 153294 13716003 ~ 13716515 (+) True G216278
TU293525 lncRNA downstream 176840 13739549 ~ 13739809 (+) True G216284
TU293526 lncRNA downstream 177804 13740513 ~ 13750306 (+) True spef1
TU293549 lncRNA downstream 203828 13766537 ~ 13769434 (+) True G216303
XR_002651877.1 lncRNA downstream 212397 13775106 ~ 13776806 (+) True LOC111195921
XM_007248563.3 mRNA upstream 68429 13485520 ~ 13494058 (+) True LOC103035225
XM_022684431.1 mRNA upstream 78116 13479176 ~ 13484371 (+) False LOC103033819
XM_007248557.3 mRNA upstream 97513 13462329 ~ 13464974 (+) True pdcd2
XM_022684653.1 mRNA upstream 97513 13462329 ~ 13464974 (+) False pdcd2
XM_007248553.3 mRNA upstream 153036 13403805 ~ 13409451 (+) True LOC103032026
XM_007248565.3 mRNA downstream 13103 13575812 ~ 13594514 (+) True sertad2
XM_007248564.3 mRNA downstream 13104 13575813 ~ 13594514 (+) False sertad2
XM_007248567.3 mRNA downstream 45580 13608289 ~ 13613437 (+) True lgalsl
XM_022684659.1 mRNA downstream 69489 13632198 ~ 13636389 (+) True echs1
XM_015605645.2 mRNA downstream 77311 13640020 ~ 13645008 (+) True fuom
trnat-ugu_90 other upstream 214854 13347561 ~ 13347633 (+) True trnat-ugu_90
trnay-gua_11 other upstream 246325 13316075 ~ 13316162 (+) True trnay-gua_11
trnay-gua_10 other upstream 247287 13315112 ~ 13315200 (+) True trnay-gua_10
TU293202 other upstream 458445 13091746 ~ 13104042 (+) True G216053
TU292989 other upstream 846582 12710638 ~ 12715905 (+) True G215886
TU294489 other downstream 3441886 17004595 ~ 17007537 (+) True borcs7
XR_002651919.1 other downstream 3604309 17167018 ~ 17175733 (+) False LOC111195981
TU294912 other downstream 4749197 18311906 ~ 18316824 (+) False eif4ebp2
TU294985 other downstream 5180524 18743233 ~ 18744231 (+) False LOC103030769
TU295009 other downstream 5274653 18837362 ~ 18847028 (+) False cxcl12

Expression Profile