RNA id: TU293854


Basic Information

Item Value
RNA id TU293854
length 1776
lncRNA type sense_over
GC content 0.36
exon number 2
gene id bcl11a
representative False

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 14722400 ~ 14780313 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTATATCAAAAGAGAATCAAATGCAGCTGATCTGTCCTGAGGCGGAGTTTACCCAGAGCACAGAGGCTACTATAAAagtaacagaacaaaaacaaaaaaaggcaaaCGCGCCGGATCCGGACGAactgttggaaaaaaaatcGCAAGTGTCTCCACAGCTTTGAAACagtctgctttattttttaaaatgatttttgcagtgtaaatcTTGCTGTTTTCAGTGTGCTGCAGCTGAGAGCTGAGTGAGAGTGAGGCTTGTGATAGTGAGGGAGGGGGGTGGTATgggataggataggatagggTTGGGgtgttgtggtggtggtggtggtgtgatgTGTGCTGGGTGCTAGTGGGCGAGGGAGGAGGCGCCTTACAGCATATTTCCTTCCTCCAAGTGTCGCGTTTCTCCGCGGGCACCCGTCGCTCTGTGCCAAGCCATCAGTGAGCTGTAACTCagcctcacttttttttttttctttttttttttttcttctttttttccaccGTGGCTCTTCACAGCTCTTCAGGTCAAACGTAACTTGCATTGGGGAAAGGTTTaagattatatataaatatataatagagaACTTAAATATAGGAAAATGCACACTCATGTTCAATTCCTatgctaaaacacatttatgatctactttttttctgtatttctagaATGGTATTTGAATTAAATGTTCACCTAGTGTAGGCACTATAGTATTTATATTGAGGCTTGTATTTTTAACTGTTGCTTGTTCTCTCAAAAGGTATTATTGTACCTTTTTTGGtagtggaaaaaaacaacaagctgCCAcggtatatttttttaatttggcaggATAATATAGTACGaattatttgtatgtttaaaaaaaaatgaactgaaaaaaaatttcaataaaaaaacaactaaagtaTGTGGCATTGTATAAAAAGGAGGCCATCTAATGGTTTCCCCGAGGAGTCTTTTGCGAATGTCCACACTAGCTAAAACAGGTGGTTGTAcatatctttttttctgttctttttttagacTCTCCTCTTCTGCTGCCATTCTGTATGCAGTAATGCAAGCTGATGTTGGGTTCTTCTGTAGTGTGCTTCTCTGTCTTCTCACCTATCTCACCTGACTACATTCCAGCATCTTAAAGAGAACAAACTTCATATGCAGTAAATACCAGTACATAAATGAAAATCattcaaataaatgaattaaaaataatcaaagttttgcaggttttttgttttcattgccAAATACTAAATGGTGCTTTATATTTAGATTGGGATGACTTTCATATGcaaagcatatttaaaaatgaaatggaaATAATGGAAAGCCCGCTTGAGTTCATACTTTTTTGTAAATGGCAATGCGGAATATTTTGTTATCAGCCTTTTCTATTCCTGTTCTGAAAGCTGTTTGTTgtaacttgaacttgaactttaTCTTTTACAATGGGAGtcactatttattattacttaaatGCTCTGTTCAGAACGGAGACATGGAATGGAtcttttttggttttctttattttgtttttgttattgttgtttttctttgaaAATGACCAAAGGTCATTGACAACCTTTGCTTTTATTTGCTGTATTTGTTTCTGGTCTATGTTGAGTTTTATTGGAGAAACCACTGTCTGTGTTTTCTGGCAGTTGTCTGCATTATCCTGTTCACACACCCATTTTGTCCCTTTAttgaaaacaattaataaaaaaattaaagtatcaCTTTGTCGGTACAGTTTCTGTGGGGAGGTGGGTCtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU293856 lncRNA upstream 22942 14744717 ~ 14745319 (+) True G216541
TU293846 lncRNA upstream 66523 14696928 ~ 14701738 (+) True G216532
TU293843 lncRNA upstream 72487 14695339 ~ 14695774 (+) True G216530
TU293832 lncRNA upstream 112980 14655036 ~ 14655281 (+) True G216523
TU293829 lncRNA upstream 123179 14642918 ~ 14645082 (+) True G216520
XR_002651914.1 lncRNA downstream 111888 14892201 ~ 14911987 (+) True LOC111195976
XR_002651915.1 lncRNA downstream 131686 14911999 ~ 14923278 (+) True LOC111195977
TU294127 lncRNA downstream 889205 15669518 ~ 15669736 (+) True G216793
TU294169 lncRNA downstream 1134618 15914931 ~ 15923311 (+) True G216831
TU294240 lncRNA downstream 1328416 16108729 ~ 16109441 (+) True G216893
XM_022684680.1 mRNA upstream 127718 14639866 ~ 14640543 (+) True LOC111195974
XM_015606612.2 mRNA upstream 155693 14609488 ~ 14612568 (+) True pcbd1
XM_007252242.3 mRNA upstream 155713 14608175 ~ 14612548 (+) False pcbd1
XM_015606620.2 mRNA upstream 262415 14493853 ~ 14505846 (+) True sec23ip
XM_007252248.3 mRNA upstream 289201 14454016 ~ 14479060 (+) True inpp5f
XM_007252231.3 mRNA downstream 736425 15516738 ~ 15542681 (+) True fancl
XM_007252228.3 mRNA downstream 1069539 15849852 ~ 15854753 (+) True LOC103023506
XM_007252227.3 mRNA downstream 1114292 15894605 ~ 16015675 (+) True slc24a3
XM_007252226.3 mRNA downstream 1237087 16017400 ~ 16022839 (+) True LOC103022884
XM_007252224.3 mRNA downstream 1244507 16024820 ~ 16086964 (+) True rin2
trnat-ugu_90 other upstream 1420628 13347561 ~ 13347633 (+) True trnat-ugu_90
trnay-gua_11 other upstream 1452099 13316075 ~ 13316162 (+) True trnay-gua_11
trnay-gua_10 other upstream 1453061 13315112 ~ 13315200 (+) True trnay-gua_10
TU293202 other upstream 1664219 13091746 ~ 13104042 (+) True G216053
TU292989 other upstream 2052356 12710638 ~ 12715905 (+) True G215886
TU294489 other downstream 2224282 17004595 ~ 17007537 (+) True borcs7
XR_002651919.1 other downstream 2386705 17167018 ~ 17175733 (+) False LOC111195981
TU294912 other downstream 3531593 18311906 ~ 18316824 (+) False eif4ebp2
TU294985 other downstream 3962920 18743233 ~ 18744231 (+) False LOC103030769
TU295009 other downstream 4057049 18837362 ~ 18847028 (+) False cxcl12

Expression Profile