RNA id: XM_007249456.3


Basic Information

Item Value
RNA id XM_007249456.3
length 737
RNA type mRNA
GC content 0.41
exon number 5
gene id borcs7
representative False

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 17004541 ~ 17007537 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTATATCGCTGTGTGGCCGATCTGCTCTGTTTGGCCCTCAGGGTGATCCGTAGCGGAGCTATTCTTCAGCTATGGCTTCTTCAGAAGCGCAGCCCCGCTTCGGTCAGTCAGTTAAAGGCCTGCTGTCGGAGAAGGTGGGCTCCTGCAGCGGGGACGTGATCGCTCTGACCCGGCAGGTGTTAAAGGGATCTCGCAGCCAAGAGCTGCTGGGGCAGGCGGCTAGAAACATGGTCATTCAAGAGGATGCCATCCTGCACTCTGAAGATAGTCTGAGGAAAATGTCCATAATCACCACTCATTTACAGTATCAGCAAGAAGCCATCCAAAAGAATGTGGAACATTCCAAAAACCTTCAGGAACAACTAAGACATTTACTCAAATAATGCTCAGCCATTTCTATGGATcttggtttgtttctttttttcagtgaagATCACATCATCAGGCGTGCATgtctcatttatttgcattgttttacTTCTCAAACAGGCATTCGGCTTTGCATATCATGAGGCCTCACTGTACGAGATCACTTTaggtttctttgtttgtttgttttattttacactaaCAATTAGATTTTATTGGAGCATGCTGCTTTATGAAAAACTGGACAGTGTAAGATAACACTgctttaacatttaaatgtctatgtaaataacaaattaaaatgtatgtacATGTTAATTTATGTTCCTTTTCtacttaaaatgaataaatgaatgaatttttaTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651981.1 lncRNA upstream 106147 16883041 ~ 16898394 (+) True LOC111196035
TU294461 lncRNA upstream 108790 16883025 ~ 16895751 (+) False LOC111196035
TU294299 lncRNA upstream 285060 16560852 ~ 16719481 (+) False G216941
TU294502 lncRNA downstream 2128 17009574 ~ 17009798 (+) True G217109
TU294516 lncRNA downstream 50884 17058330 ~ 17060581 (+) True G217122
TU294550 lncRNA downstream 256684 17264130 ~ 17264431 (+) True G217140
TU294658 lncRNA downstream 387593 17395039 ~ 17395249 (+) True G217222
TU294793 lncRNA downstream 769320 17776766 ~ 17777086 (+) True G217313
XM_007249452.3 mRNA upstream 10133 16982053 ~ 16994408 (+) False wbp1l
XM_022684717.1 mRNA upstream 10133 16982474 ~ 16994408 (+) True wbp1l
XM_022684715.1 mRNA upstream 37135 16931098 ~ 16967406 (+) True fbxw4
XM_022684716.1 mRNA upstream 37135 16931098 ~ 16967406 (+) False fbxw4
XM_022684400.1 mRNA upstream 81601 16916701 ~ 16922940 (+) True fgf8_1
XM_022684718.1 mRNA downstream 3109 17010555 ~ 17029001 (+) False cnnm2
XM_007249457.3 mRNA downstream 3110 17010556 ~ 17029001 (+) True cnnm2
XM_007249460.3 mRNA downstream 44534 17051980 ~ 17056045 (+) True LOC103037825
XM_007249462.3 mRNA downstream 56450 17063896 ~ 17067641 (+) True polr1c
XM_022684720.1 mRNA downstream 69593 17077039 ~ 17107707 (+) False ldb1
trnat-ugu_90 other upstream 3656908 13347561 ~ 13347633 (+) True trnat-ugu_90
trnay-gua_11 other upstream 3688379 13316075 ~ 13316162 (+) True trnay-gua_11
trnay-gua_10 other upstream 3689341 13315112 ~ 13315200 (+) True trnay-gua_10
TU293202 other upstream 3900499 13091746 ~ 13104042 (+) True G216053
TU292989 other upstream 4288636 12710638 ~ 12715905 (+) True G215886
XR_002651919.1 other downstream 159572 17167018 ~ 17175733 (+) False LOC111195981
TU294912 other downstream 1304460 18311906 ~ 18316824 (+) False eif4ebp2
TU294985 other downstream 1735787 18743233 ~ 18744231 (+) False LOC103030769
TU295009 other downstream 1829916 18837362 ~ 18847028 (+) False cxcl12
XR_002651927.1 other downstream 2160417 19167863 ~ 19203516 (+) False LOC103040131

Expression Profile