RNA id: XM_007249494.3


Basic Information

Item Value
RNA id XM_007249494.3
length 4462
RNA type mRNA
GC content 0.45
exon number 10
gene id pax2
representative False

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 18004253 ~ 18039352 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCAGCTTTTAGAAACAGACACACTGGGAAGAGGGCTTTCATTCTCAGCCCAAAGCTTCTAACAGGCACATCCCATTCCTGAAGAGAGGGGGACCCGCTCGCTTACAGTCCTGCGCCGTGTTCATGATCTTTAGCCGCCCGCAGCCTTTTGCCTCCGTTCcggcctcagctccagcactcaGCGCGCTGAAAACTACGGATTTTACACGGCGGACAGCAGCAGCTTGCGCTCCTTCCTCTGAAACATGTGGCACGCGGCGGTGCACTGACTGACTGAGCGAGCACTTCAAGCCCAATCCCGcagcgcgcgcgagagagagccAGCCAGTGCGTGCCTGAGTGCGAGTGTGTATGCATATGCGTGCCTGCGTGTGTTTTCCCCTCTCCGCGAGACGAGTGGCGGACATGCTGCACTGTCCAGCGCTGCTGCTCcatcactgactgactgaagaAGGAACTGAACTGGAGGCTCAGAGCTGAACTTGCTGAAGAAGTTCCCCCCCGCGAGCCCACCCCCTCTGGGCCTCGGACGCCCTCTGCTTCGAGCcacctgtgtttttattttttcttttattaatttttttaaactcacGCTTAAAGCTGCATAACCGAGGCGAGACGGCGACCTCCGTCGATTATCTCTCCTTCCTTTGCTATCCAATGGATATTCACTGCAAAGCAGACCCCTTCTCCGCCATGCACCGGCATGGGGGTGTAAACCAGCTAGGCGGGGTGTTTGTGAATGGCAGACCCCTACCTGATGTGGTCAGGCAAAGGATCGTGGAGCTGGCGCATCAAGGGGTCAGACCCTGTGACATCTCCAGACAACTCCGGGTCAGCCACGGCTGTGTCAGCAAAATCCTCGGCAGATACTATGAAACCGGCAGCATTAAGCCTGGAGTTATTGGCGGGTCCAAACCCAAAGTGGCCACCCCAAAAGTAGTGGATAAAATCGCAGAGTACAAGCGACAGAACCCCACCATGTTCGCCTGGGAGATCAGAGACAGACTGCTGGCTGAGGGAGTGTGTGACAACGACACGGTGCCAAGTGTGTCGTCTATCAACAGGATAATAAGGACCAAAGTTCAGCAGCCTTTCCATCCATCTCCAGACGGCACGGGGACTACCCTCACCACAGGACACACTATAGTGCCTAGCACGACTTCTCCACCCGTATCAAGTGCTTCCAACGACCCAGTGGGCTCCTACTCCATCAACGGCATCCTCGGAATCCCTCGCTCTaatggagaaaagagaaaacgtGACGATGATGGCTCAGATGGCTCTGGCCCAAACAGTgattctcagggtagtgtggaGAGTTTACGGAAGCACCTGAGGGCCGATGCCTTCactcagcagcagctggaggctCTGGACCGGGTGTTTGAGCGGCCGTCGTACCCCGACGTCTTCCCAACGTCAGAGCACATCAAGCCAGAGCAGGCTAATGAATACGCACTACCAGCACTGAACCCAGGACTGGACGAGGTCAAGCCCAGTCTGTCGACCAGCGCCAGCTCAGAATTGGGCTCCAGTGTGTCGCAGAGCTACCCAGTAGTGACAGGTCGAGACATGGCCAGCACGACTCTCCCAGGCTACCCCCCTCATGTCCCCCCCACTGGGCAGGGAAGCTACCCCACCTCAACACTTGCTGGAATGGTCCCTGGAAGCGACTTTTCAGGAAACCCCTACTCCCATCCACAATACACAACCTACAATGAGGCTTGGCGGTTCAGCAACCCTGCATTATTAAGTTCCCCTTATTATTATAGTGCCGCATCCCGTGGCTCCGCCCCTCCCACTGCTGCCACTGCCTATGACCGCCACTAGTTACCATGGCAACCCAATCAAACTGCAGCACCATGGCCGTGGCCTCCATATTGTACCAGTCTGAATGGCATTAAGGTCCACGGGATTGAACGTGACTCTCCGCAGTCTTCAGTTTGGCGAGGTCAAGCTGAGATTAAGAGGGTCGAGCAGCGgtggttttttttttcgccTCTGAGCATTTCGTCGACCCTTCTGATCATCAACTCCAGAGCCCTTCCTCGTCCTTCAGCTCGccggaaaaacaaaaaagactgAACGTTTTGTCCGAAAAAGACTCTGAAagattatacaaaatatatatattataaaatataaaaacatgacaaaccgtgtgaaaaatacaaagtaacaagtgatgtgtttttttttttgttgcttttttccaTCAATACATTCCTTTACATACTGTACTTAAATCACTGACCTAGGATTGACCGAGGCATTTAGAGTTGTCCTTTGCCAATGTCCTACCATTCCCACTGTCTTACCTCTCACGGACACGCATCAATTATGCAAGGGGTGCAGAGCAGGAGAGACCTGCAGCAGGAAGCTTCTACTCCCTCCCCTGTCATAATCAGCAGTTTAGTCATCTGCAGCCTCTGATTGATGGCATGATAATAGCAAAAGACATACATTCTTTTCTGTGATACACAATCATATGTACAAGTCTGAATAttgagaataaaaaagaaaacgtgCTTTCAAATGGCCTGAAAAGAAATGATTATTGTTTtacaagtttaatttttttctttttttttttacacagtcaGTATTATGCCAGATTTCAGTCTTGCAGTTAAAATTGGTTTAAATAGTTAATTCTGTTACAATTCCTTAATATATCATGCTTTGTTCATTTTTGCACTATTTAATCACATAATTTCAAAACGGAGTGAGCTAGCAAATTTTTTTATACACTTACTGTATATGCATAAACACATACAACCATTCATTTGAAATGCTTTGTAACTATGTGGCAGATTTGGGCAAAGTAACATCATTTGAATGTGTATCTTCcataatcttaatcatttttttgcaaaactgCTGTTAAATTATTTCCTTAGAACCAAGAAATGAAACATACTGCTATTcttactaaaagaaaaaatatgctGTATGTCTAAACAACACTCCTAATACTGCCTTACTCCCATTCTTTCCCTCCTTTTAACCCCCCAACATGGGTTAAAGCAACATTGGCAGTAGTCCTGAGAGGTAGACATGCATGTAGCACAGCATTTGTGTTGTTGATCACGATTTCTCTAAATCTAGGTGGGACATTCAAGACGGAAGTGCAAACTGATTCATGGCATTACACTCCTGGAAACTGTAAAGTGAATGTAACTTTTACCACATTTGCCAAAGACTTAgtttgatatttaatattttatttgcagtatCTGTATGCATTAATAAAGCAGTATTATGTTTTAATAGTAGTCAACACTGATTGTATGTTGGTAATGTTAAATTGCGAAAAAAAACGCAAAAGGGTCCATCAAATACACATTACAGTGTacacgaaaaaaaaacaaggtgtaTTCAGTTACTTAATGTTATGTCATTTGCAACAAATTGCTGCTTTGTAGAATTTGTGTATAATGTGAAGACAATTCTTCTATGTATATAAGATCACCTACATCTGACCATTGCAGTATCGTACTAATTTACTGATTCCATTTGTACATATGCGAtttgaggaagaaaaaaaaaaggattacaTACATTTGTGTCTTATGTGTTGTGTTTTGCACTAAAGCACAAcgataaaaaggaaaaaaaatgcaaaaaaaaaaaagcttcttctgGGTTTCAAATGACACTCATCACATGTACGGCTGGTTGTATGTTTGGTTCGGTTTTTCTGGACTTgttcatcattattttttaagtcaCTATGCAAAGCAAGTAAAATGGCGTTTCTGTATTCGTTCTGTTTTATTACTGCGTTCAATTTGACATTCCTAGTTCCGGTTGATCCAACGGCCTCTTATCCTGAGTCCTGTTGatcctgctactactactacagtcTGTATAAGGAAGCAAACAGTGCAAACATGCCTGGTTCTGAGGACTGGACTGTGCTTCACACCAGTCTTTATACCCTGATTTTGGCACAATATTTGGTGCAACTTGCAgcaaactataatgaaaaaaaatatatagcacaTATACAGATGTTCCTGcttatttatacatacatacacacagtgagAGATAAACCGATCCATTCCTTCAGATCCATAACGCCTTCTAGCAGCATGGAGTGAACTGCAGTAacgaataaaataacactgttgAATACCGTTACAGCTGAAAAGGTCAAAAGTGCAGTCCCGCTTAGAACGAAGAGAGTCCTGTCCCACTCGTTGCactacatgtttttctttttttttgtctttttgtaaaagaggcagagagaaaagaCCTACATCATTAGAGCAAGGCAGAGGACATGGTTCTCCACCAGTTGTTAAAATGATACAGGAGATATGTCACGGACATAACAAGAGTTTCTGATGAAAATCTATAACAAAAGCCATGTGGCCTCAATCATTGCTCTGTTCCACTTCTGTCCAATTCCCTTTTTTGTGCACATGAGAAATAAATTTTTTGTATGTCAA

Function

GO:

id name namespace
GO:0001708 cell fate specification biological_process
GO:0035775 pronephric glomerulus morphogenesis biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0060113 inner ear receptor cell differentiation biological_process
GO:0072114 pronephros morphogenesis biological_process
GO:0021588 cerebellum formation biological_process
GO:0009880 embryonic pattern specification biological_process
GO:0043049 otic placode formation biological_process
GO:0048596 embryonic camera-type eye morphogenesis biological_process
GO:0030878 thyroid gland development biological_process
GO:0007422 peripheral nervous system development biological_process
GO:0030901 midbrain development biological_process
GO:0030917 midbrain-hindbrain boundary development biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU294793 lncRNA upstream 227170 17776766 ~ 17777086 (+) True G217313
TU294658 lncRNA upstream 609007 17395039 ~ 17395249 (+) True G217222
TU294550 lncRNA upstream 739825 17264130 ~ 17264431 (+) True G217140
TU294516 lncRNA upstream 943675 17058330 ~ 17060581 (+) True G217122
TU294502 lncRNA upstream 994458 17009574 ~ 17009798 (+) True G217109
TU294853 lncRNA downstream 60607 18099954 ~ 18161772 (+) True G217359
TU294858 lncRNA downstream 77855 18117202 ~ 18124261 (+) True G217362
TU294867 lncRNA downstream 112854 18152201 ~ 18154348 (+) True G217368
TU294870 lncRNA downstream 115058 18154405 ~ 18158027 (+) True G217369
TU294856 lncRNA downstream 124035 18163382 ~ 18167900 (+) True G217361
XM_007249490.3 mRNA upstream 194877 17800741 ~ 17809379 (+) True LOC103046358
XM_007249487.3 mRNA upstream 237465 17761326 ~ 17766791 (+) True LOC103045557
XM_015605854.2 mRNA upstream 243460 17755968 ~ 17760796 (+) True LOC103045248
XM_007249482.3 mRNA upstream 303760 17677154 ~ 17700496 (+) True LOC103043721
XM_022684434.1 mRNA downstream 103248 18142595 ~ 18149799 (+) True cuedc2
XM_007249502.3 mRNA downstream 162991 18202338 ~ 18212333 (+) True LOC103023375
XM_015605859.2 mRNA downstream 193862 18233209 ~ 18287507 (+) True LOC103023691
XM_015605860.2 mRNA downstream 193862 18233209 ~ 18287507 (+) False LOC103023691
XM_007249508.3 mRNA downstream 272546 18311893 ~ 18317228 (+) True eif4ebp2
XR_002651919.1 other upstream 828523 17167018 ~ 17175733 (+) False LOC111195981
TU294489 other upstream 996719 17004595 ~ 17007537 (+) True borcs7
trnat-ugu_90 other upstream 4656623 13347561 ~ 13347633 (+) True trnat-ugu_90
trnay-gua_11 other upstream 4688094 13316075 ~ 13316162 (+) True trnay-gua_11
trnay-gua_10 other upstream 4689056 13315112 ~ 13315200 (+) True trnay-gua_10
TU294912 other downstream 272559 18311906 ~ 18316824 (+) False eif4ebp2
TU294985 other downstream 703886 18743233 ~ 18744231 (+) False LOC103030769
TU295009 other downstream 798015 18837362 ~ 18847028 (+) False cxcl12
XR_002651927.1 other downstream 1128516 19167863 ~ 19203516 (+) False LOC103040131
TU295347 other downstream 1303647 19342994 ~ 19345401 (+) False rrp12

Expression Profile