RNA id: TU294947


Basic Information

Item Value
RNA id TU294947
length 446
lncRNA type intronic
GC content 0.55
exon number 2
gene id G217420
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 18423830 ~ 18424763 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

attttttttatttctaattttttcccattttctccccaatttacacggccaattacccaacccattcattaggactccccctatcactagtgatacctcaacacaccaggagggtgaagactagcacatgcttcctccgatacatgtgaagtcagccaccgcttcttttcgagctgctgcagcattaccgagcagccagcgtgcttggaggaaagcgcagcggctcggctccagtacatcagctcacagacgccctgtgctgcagacatccccgtaggagtgatgtggggagagagcgccatctacccacccagagggagcagggccaattttgctccctctgacgccggcagcttgatggcaaagctgcatgagctggggttcgaaccggcgacctcctgctcatagtggcagcgctttagaccgctggaccactcggcgccccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU294861 lncRNA upstream 203261 18187590 ~ 18220569 (+) True G217364
TU294856 lncRNA upstream 255930 18163382 ~ 18167900 (+) True G217361
TU294853 lncRNA upstream 262058 18099954 ~ 18161772 (+) True G217359
TU294961 lncRNA downstream 257199 18681962 ~ 18689693 (+) True G217431
TU294964 lncRNA downstream 263609 18688372 ~ 18695794 (+) True G217433
TU294971 lncRNA downstream 273230 18697993 ~ 18699151 (+) True G217435
TU294975 lncRNA downstream 289288 18714051 ~ 18714310 (+) True G217438
TU294983 lncRNA downstream 293542 18718305 ~ 18773411 (+) False G217439
XM_022684756.1 mRNA upstream 70800 18349740 ~ 18353030 (+) True rps24
XM_007249517.3 mRNA upstream 70800 18349740 ~ 18353030 (+) False rps24
XM_007249518.3 mRNA upstream 70813 18349740 ~ 18353017 (+) False rps24
XM_007249510.3 mRNA upstream 86009 18322590 ~ 18337821 (+) True LOC103025593
XM_007249508.3 mRNA upstream 106602 18311893 ~ 18317228 (+) True eif4ebp2
XM_022684758.1 mRNA downstream 5264 18430027 ~ 18634603 (+) False LOC103028339
XM_022684757.1 mRNA downstream 5264 18430027 ~ 18634603 (+) False LOC103028339
XM_022684760.1 mRNA downstream 5264 18430027 ~ 18634603 (+) False LOC103028339
XM_022684762.1 mRNA downstream 5264 18430027 ~ 18634603 (+) False LOC103028339
XM_007249520.3 mRNA downstream 5265 18430028 ~ 18634603 (+) False LOC103028339
TU294912 other upstream 107006 18311906 ~ 18316824 (+) False eif4ebp2
XR_002651919.1 other upstream 1248097 17167018 ~ 17175733 (+) False LOC111195981
TU294489 other upstream 1416293 17004595 ~ 17007537 (+) True borcs7
trnat-ugu_90 other upstream 5076197 13347561 ~ 13347633 (+) True trnat-ugu_90
trnay-gua_11 other upstream 5107668 13316075 ~ 13316162 (+) True trnay-gua_11
TU294985 other downstream 318470 18743233 ~ 18744231 (+) False LOC103030769
TU295009 other downstream 412599 18837362 ~ 18847028 (+) False cxcl12
XR_002651927.1 other downstream 743100 19167863 ~ 19203516 (+) False LOC103040131
TU295347 other downstream 918231 19342994 ~ 19345401 (+) False rrp12
TU295577 other downstream 1595651 20020414 ~ 20074343 (+) True G217874

Expression Profile