RNA id: TU294961


Basic Information

Item Value
RNA id TU294961
length 710
lncRNA type inter_gene
GC content 0.53
exon number 2
gene id G217431
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 18681962 ~ 18689693 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGAGGGCAGTCTTTGATGTAATGTCCCTTATTGAAGCAGAGATGGCATAGGTAGTTTGGTGGAGGTCTCTTGCTGGGCTTGCGTGGCTCAGAGGACAGGGAGAGGTCAGAAAAGTGGTCCGTTAGAGAGTTCAACCCATCCACTATGTTGTTCAGAGAGCCGTACGGGGAGACGCTTTTGTATAAGCCATTATTCAAGGCCTGTTCCTCTGAAGCTGAAAGAAGTTGCTGAGATAGTTggaagtgagagaggagctgagGTCGGCTGCGGGAGCCTTGCTGTAGTTCAGGTCCGGATGGGAAGCGTTGGGCTCGGGTCGGAAGGCATCGAAAGCGCTGGTCTGATGGGTGTCTTGTAAGGAGAGATAGACCCAGTTCAGCAGCTGTGCGGGCTGGTACACTGAGGTACTGCTGTCTATGGCAGACAACAAGCTCATCTTTTTGCGGATtgactgtctctccctctcccgcAGTCACTTTCACACAACTCTCAACTCTTAACTCTCAACCGCGACCTGTTCGAAGTTCACTGAACGCGCCGTCCGCTTTTTCACACCCCACAAGCGGCGAGTTCTCGCTCTTCTTCTTCCCGCTCCGACCCTGTTCCTCTCCTGGGAACCCCGTCCCAGGTTTAAGATAACGCCCGAGTTATTCCTCTAACATGacattacaacaaaaaaaaacttttcgcCCGCTGCCGGCGGCCCGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU294947 lncRNA upstream 257199 18423830 ~ 18424763 (+) True G217420
TU294861 lncRNA upstream 461393 18187590 ~ 18220569 (+) True G217364
TU294856 lncRNA upstream 514062 18163382 ~ 18167900 (+) True G217361
TU294870 lncRNA upstream 523935 18154405 ~ 18158027 (+) True G217369
TU294867 lncRNA upstream 527614 18152201 ~ 18154348 (+) True G217368
TU294971 lncRNA downstream 8300 18697993 ~ 18699151 (+) True G217435
TU294975 lncRNA downstream 24358 18714051 ~ 18714310 (+) True G217438
TU294983 lncRNA downstream 28612 18718305 ~ 18773411 (+) False G217439
TU294986 lncRNA downstream 57699 18747392 ~ 18750080 (+) True G217442
TU294976 lncRNA downstream 64224 18753917 ~ 18758188 (+) False G217439
XM_007249524.3 mRNA upstream 41087 18636068 ~ 18640875 (+) True LOC103029282
XM_022684893.1 mRNA upstream 41087 18636935 ~ 18640875 (+) False LOC103029282
XM_022684759.1 mRNA upstream 47359 18376648 ~ 18634603 (+) True LOC103028339
XM_022684758.1 mRNA upstream 47359 18430027 ~ 18634603 (+) False LOC103028339
XM_022684757.1 mRNA upstream 47359 18430027 ~ 18634603 (+) False LOC103028339
XM_007249530.3 mRNA downstream 41904 18731597 ~ 18732521 (+) True c25h10orf10
XM_007249529.3 mRNA downstream 53513 18743206 ~ 18744327 (+) True LOC103030769
XM_022684782.1 mRNA downstream 147651 18837344 ~ 18847024 (+) True cxcl12
XM_007249533.3 mRNA downstream 220253 18909946 ~ 18938453 (+) True ercc6
XM_007249534.3 mRNA downstream 252555 18942248 ~ 18948011 (+) True drgx
TU294912 other upstream 365138 18311906 ~ 18316824 (+) False eif4ebp2
XR_002651919.1 other upstream 1506229 17167018 ~ 17175733 (+) False LOC111195981
TU294489 other upstream 1674425 17004595 ~ 17007537 (+) True borcs7
trnat-ugu_90 other upstream 5334329 13347561 ~ 13347633 (+) True trnat-ugu_90
trnay-gua_11 other upstream 5365800 13316075 ~ 13316162 (+) True trnay-gua_11
TU294985 other downstream 53540 18743233 ~ 18744231 (+) False LOC103030769
TU295009 other downstream 147669 18837362 ~ 18847028 (+) False cxcl12
XR_002651927.1 other downstream 478170 19167863 ~ 19203516 (+) False LOC103040131
TU295347 other downstream 653301 19342994 ~ 19345401 (+) False rrp12
TU295577 other downstream 1330721 20020414 ~ 20074343 (+) True G217874

Expression Profile