RNA id: TU294978


Basic Information

Item Value
RNA id TU294978
length 2435
lncRNA type inter_gene
GC content 0.36
exon number 3
gene id G217439
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 18718305 ~ 18773411 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GACTTGTTGGTTTAAGTCAGAAACCAATTGGACTTGGTCGCCGGAGCACTCAAACTGAaactttttatgcttttaaattCTGCAGGATAGGATTTAacgaaaagaagaagaaggccTGCTTCACACCCAAAAAATCCAAAACtaaaaagaagacaaagaagaagaggCAGTAACTGTTTGGAGCCTATAGAACATACGCCCTAATAAAAGGGCCATGCTCATAAAGATATAATAAGCAAGCTATTTGATATTTTATACACTGTTTAAAGGTTCTATATATAACTATTACTCTATATATAACTATTACTTTgcttagttaaaaatgtgtcACATGTCACAAAACCCTTTTTGCTTTGAATGTATAATGAAAGTACTGGCACCTTTTCTGTGACTAATAATATTATACTGTTATTTTCTTACACTGTTTAAACACAAGCTTTTGTAtttgatgtttgtttttttatacataatcaAATGAATGTAAATTGAACGTGAACAATTACTTCAAATCTAATAAGCCAAAGAATATAAGGATTAAGATAGaagaataaagcataaaaaacagCAGATGTGTTAGCTTAAGATAAGACAAAAGTGATATTTAATACCGGAACGGAAATGGGAATGTGCAGTCAGAAGAGAGCATGCTGTGACATGACCCCACCAATGTCTATAAccataaattattaaatcagTACACGTGGGTTCATACAAGAAAAGAGACTAAATGGCTGCCGTATGGAATACAAAATTACAAAGAAGCTGTGTCTTGTCTCCACAAGACAAAAGAACACCAATCAAACTAGTCTTGTTCAGGGATGCACAGCAGTTTAAATCACAGTATGATCCTCCTAACTAATCATATGCTCCACCAGCTGTGGCCCTTCATTAGGCTACAGTCTAATTGAGTCTTTCTCAGTGTGGTGGTGGTGCAGCTGCAGAGCTCCTTAGCCACAGCACTTAACCACACTCCACAGCTTGTGGAGATGATGAGTAGgttagctaataAGAAGGGAAACTGGAGATTTTGCAGAAGTTATATGAGCTAATGTCTACAGCAGAATCATGTACATGTAAAGCTATATATAAACAGATTCCTGGCAAGCATCatttatgtagttttttttaagtcctGAGAATTGACATTAATGAtaaatgcagtttattttaataaataaaactagacAGAAATAACTAAATATGTCGAGTAAATAAACGATAAAAAACATTTCCTAAGTAGACAGTTGTATGATATAGTTATTGTATTTAACTAGCTTAATTTACCATGTTAGGTAATTTGTTAGGTAGGTTAGTTTTCTTGAATCTAGAGCTCCTTAGCCACAATCCTTAACAACACTTAGCATCTCGAGATGATGAgtaagttagctaacctaaataAGAAGGGAAACTGGAGGTTTTGCAGAAGTTATTTGTGCTGGAAAACCCGTGGTTGGTGTGATGAGCTAATGTCTATAGCAGAGAAATGTAACGTTAACTGTTAGGTTAGGCAGCTAACATGTAAAGCTATAACTATAACAGTCTGACAACCCAAATTTAGATAGTTAGGATCCTGAGAACTGacattaataataacagtagtTTATCTTAATAAATACGACAGGCAGAATTCCAaaattaactaaatatataaCTTAGATTTAGCAGTTTCAAAAGTATggaaaagaacaataaaagcatttcctATGTATACATGTAACTAATTaacgctagctaggttagctaacctagctttctAGACTCCAGTGCACAGGGTTTAATGCTGCAGTATCTCTTAATCCTCAGCGCCAGTTCCAGCGTAGCTACTAAAATATCCAACACTTCTCTAAGCTCCTCCTTTTCCTGTGGTATAAATGTCCTGTTAGCTTACCGCGGTCGTGGTACATCGCCTCCTTCTCCAGTGTCAATGTAACAGGGACGTGCTCTCGGTCTGAAAGGTGTGTTTGACGGTACTGCACTGTAGTCCGCCTGCTTGTTCCTCGCTCAGGGGGAGGAGCGTTTTTACATACCGTACTTAAGTGACTACttcatcagccaatcagagaataATCTCACAGGGTAAGCCAATCATAACTACGGGGAGGTGGTCTTATTTGGTTGTCCCGGGAAACGTATTCACCGGTTTCGTGGTCATGATGATCAGCTGCTTCCtcctgcacactctctccacactcAGCTGTTCTGGACACAGTTCAGGGATTAACGTTAGTTTAACAACAAAAGCAAtaagatatattttaataatatccTTCTTTTTGTAATATTACTCAATTCATCTCCAAAGGTAGACCTGTTGATCAatgttttgcttatttttgaTCAGTTTTTTATCCACAAGTCTATGTACTTGGTATacagttcaatttaattaaataatatataaatttaactgtataccattttttttgtttgatttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU294986 lncRNA upstream 3837 18747392 ~ 18750080 (+) True G217442
TU294975 lncRNA upstream 39607 18714051 ~ 18714310 (+) True G217438
TU294971 lncRNA upstream 54766 18697993 ~ 18699151 (+) True G217435
TU294964 lncRNA upstream 58123 18688372 ~ 18695794 (+) True G217433
TU294961 lncRNA upstream 64224 18681962 ~ 18689693 (+) True G217431
TU295017 lncRNA downstream 180837 18939025 ~ 18939903 (+) True G217472
XR_002651918.1 lncRNA downstream 461325 19219513 ~ 19231760 (+) True LOC111195980
TU295330 lncRNA downstream 514749 19272937 ~ 19273154 (+) True G217696
TU295359 lncRNA downstream 604490 19362678 ~ 19365255 (+) True G217715
TU295434 lncRNA downstream 739876 19498064 ~ 19518320 (+) True G217768
XM_007249529.3 mRNA upstream 9590 18743206 ~ 18744327 (+) True LOC103030769
XM_007249530.3 mRNA upstream 21396 18731597 ~ 18732521 (+) True c25h10orf10
XM_007249524.3 mRNA upstream 113042 18636068 ~ 18640875 (+) True LOC103029282
XM_022684893.1 mRNA upstream 113042 18636935 ~ 18640875 (+) False LOC103029282
XM_007249523.3 mRNA upstream 119314 18601304 ~ 18634603 (+) False LOC103028339
XM_022684782.1 mRNA downstream 79156 18837344 ~ 18847024 (+) True cxcl12
XM_007249533.3 mRNA downstream 151758 18909946 ~ 18938453 (+) True ercc6
XM_007249534.3 mRNA downstream 184060 18942248 ~ 18948011 (+) True drgx
XM_015605843.2 mRNA downstream 184063 18942251 ~ 18948011 (+) False drgx
XM_022684784.1 mRNA downstream 216871 18975059 ~ 18990050 (+) True LOC107197625
TU294985 other upstream 9686 18743233 ~ 18744231 (+) False LOC103030769
TU294912 other upstream 437093 18311906 ~ 18316824 (+) False eif4ebp2
XR_002651919.1 other upstream 1578184 17167018 ~ 17175733 (+) False LOC111195981
TU294489 other upstream 1746380 17004595 ~ 17007537 (+) True borcs7
trnat-ugu_90 other upstream 5406284 13347561 ~ 13347633 (+) True trnat-ugu_90
TU295009 other downstream 79174 18837362 ~ 18847028 (+) False cxcl12
XR_002651927.1 other downstream 409675 19167863 ~ 19203516 (+) False LOC103040131
TU295347 other downstream 584806 19342994 ~ 19345401 (+) False rrp12
TU295577 other downstream 1262226 20020414 ~ 20074343 (+) True G217874
TU295704 other downstream 1654056 20412244 ~ 20415643 (+) False LOC103032529

Expression Profile